| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| shha | 0.422 | cyt1 | -0.379 |
| sox2 | 0.406 | cyt1l | -0.304 |
| shhb | 0.401 | pfn1 | -0.284 |
| si:dkey-208c12.2 | 0.388 | krt4 | -0.267 |
| fgfrl1b | 0.380 | krt5 | -0.256 |
| pitx1 | 0.374 | si:dkey-16p21.8 | -0.248 |
| foxa1 | 0.330 | col1a2 | -0.243 |
| krt18a.1 | 0.324 | spaca4l | -0.243 |
| cxcl12b | 0.314 | krtt1c19e | -0.241 |
| barx1 | 0.300 | col2a1b | -0.235 |
| rbp5 | 0.296 | col11a1a | -0.234 |
| fxyd1 | 0.293 | rbp4 | -0.226 |
| ptch2 | 0.284 | col1a1b | -0.225 |
| foxa | 0.270 | ecrg4b | -0.224 |
| wnt11r | 0.268 | zgc:175088 | -0.221 |
| fzd8a | 0.264 | thy1 | -0.219 |
| ephb4a | 0.260 | col1a1a | -0.219 |
| sox19b | 0.259 | lgals1l1 | -0.209 |
| fzd5 | 0.248 | si:dkey-33c14.3 | -0.205 |
| sema3bl | 0.248 | cfl1l | -0.200 |
| fabp2 | 0.241 | tmsb1 | -0.195 |
| tmem88b | 0.232 | actb1 | -0.195 |
| pax1b | 0.227 | tfap2a | -0.192 |
| wnt11f2 | 0.226 | actb2 | -0.191 |
| pitx2 | 0.226 | aep1 | -0.190 |
| ociad2 | 0.225 | zgc:136930 | -0.188 |
| sox3 | 0.225 | s100a10b | -0.186 |
| nkx3.3 | 0.222 | kera | -0.185 |
| inhbaa | 0.222 | ptgdsb.1 | -0.184 |
| mycn | 0.222 | cap1 | -0.182 |
| dmrt2b | 0.220 | col5a1 | -0.182 |
| ackr3b | 0.215 | si:ch211-166a6.5 | -0.181 |
| hmgn2 | 0.211 | zgc:162730 | -0.180 |
| rarga | 0.211 | col14a1b | -0.179 |
| pltp | 0.210 | wu:fa03e10 | -0.179 |