| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zic1 | 0.134 | hoxb9a | -0.093 |
| fabp7a | 0.122 | hoxc3a | -0.081 |
| zic4 | 0.117 | hoxb8a | -0.079 |
| CR848047.1 | 0.116 | elavl3 | -0.076 |
| her6 | 0.116 | hoxd3a | -0.073 |
| CU467822.1 | 0.106 | vim | -0.071 |
| fgfr2 | 0.104 | hoxc9a | -0.070 |
| smoc2 | 0.100 | myt1b | -0.070 |
| cyp26b1 | 0.095 | hoxb3a | -0.067 |
| AL845362.1 | 0.095 | hoxa9a | -0.066 |
| sfrp5 | 0.094 | hoxd9a | -0.066 |
| cd82a | 0.094 | hoxb1b | -0.065 |
| ppap2d | 0.093 | zc4h2 | -0.064 |
| prss35 | 0.092 | hoxc8a | -0.064 |
| klf6a | 0.092 | hoxa9b | -0.063 |
| CR751602.2 | 0.091 | hoxb7a | -0.062 |
| sox13 | 0.090 | hoxb10a | -0.060 |
| sox9a | 0.088 | hoxa3a | -0.059 |
| id1 | 0.087 | hoxa10b | -0.058 |
| efnb1 | 0.087 | zfhx3 | -0.058 |
| podxl | 0.087 | LOC100537384 | -0.058 |
| lrig1 | 0.087 | hoxc6b | -0.058 |
| kirrel3l | 0.086 | stxbp1a | -0.058 |
| cxcl12a | 0.086 | stx1b | -0.057 |
| slc1a2b | 0.086 | pik3r3b | -0.057 |
| gsx2 | 0.084 | elavl4 | -0.057 |
| sox2 | 0.083 | snap25a | -0.057 |
| jam3b | 0.082 | sncb | -0.057 |
| gpm6bb | 0.082 | zgc:100920 | -0.056 |
| zgc:165461 | 0.081 | myt1a | -0.056 |
| boc | 0.081 | si:ch73-386h18.1 | -0.055 |
| f3a | 0.080 | gng3 | -0.054 |
| nkx2.9 | 0.079 | jagn1a | -0.054 |
| sox3 | 0.079 | onecut1 | -0.054 |
| slc1a3b | 0.079 | hoxa11b | -0.053 |