| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.442 | krt91 | -0.261 |
| emx2 | 0.440 | gapdhs | -0.249 |
| hoxc3a | 0.417 | krtt1c19e | -0.246 |
| BX005254.3 | 0.404 | col1a1a | -0.234 |
| hoxb10a | 0.398 | col1a1b | -0.233 |
| hoxb7a | 0.391 | aqp3a | -0.228 |
| vcana | 0.388 | rbp4 | -0.228 |
| hoxb9a | 0.385 | col1a2 | -0.219 |
| LOC101882251 | 0.381 | si:dkey-33c14.3 | -0.218 |
| insl5a | 0.381 | krt5 | -0.215 |
| apoc1 | 0.369 | eef1da | -0.214 |
| hoxc8a | 0.367 | rplp2 | -0.210 |
| tpm4a | 0.350 | anxa1a | -0.205 |
| sp8b | 0.344 | cxl34b.11 | -0.203 |
| hoxc6b | 0.339 | capns1a | -0.200 |
| cdaa | 0.335 | col14a1b | -0.200 |
| asb11 | 0.333 | cotl1 | -0.199 |
| lin28a | 0.333 | sparc | -0.196 |
| prickle1a | 0.331 | capgb | -0.195 |
| hoxd9a | 0.329 | zgc:136930 | -0.193 |
| hoxa10b | 0.326 | epgn | -0.190 |
| mllt3 | 0.318 | si:ch211-39i22.1 | -0.190 |
| hoxd10a | 0.314 | aep1 | -0.185 |
| BX927258.1 | 0.309 | lgals1l1 | -0.184 |
| crabp2a | 0.306 | ahcy | -0.183 |
| dusp5 | 0.298 | postnb | -0.181 |
| hoxd3a | 0.296 | anxa2a | -0.179 |
| hoxa9b | 0.294 | si:dkey-183i3.5 | -0.177 |
| ssr3 | 0.294 | ptmaa | -0.177 |
| XLOC-001964 | 0.293 | itgb1b.2 | -0.174 |
| hoxd12a | 0.293 | wu:fa03e10 | -0.173 |
| hacd3 | 0.292 | ak1 | -0.173 |
| ccdc3a | 0.292 | pvalb1 | -0.171 |
| sp8a | 0.290 | col17a1a | -0.170 |
| nradd | 0.288 | stmn1a | -0.165 |