| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb6a | 0.144 | cspg5a | -0.014 |
| hoxb5b | 0.143 | en2b | -0.014 |
| hoxb6b | 0.135 | mir181b-3 | -0.013 |
| hoxb5a | 0.124 | hspb1 | -0.013 |
| hoxb8a | 0.118 | ek1 | -0.013 |
| hoxc1a | 0.097 | myt1la | -0.012 |
| hoxc3a | 0.082 | celf2 | -0.012 |
| hoxa5a | 0.081 | sox19a | -0.012 |
| hoxb8b | 0.076 | ctnnb1 | -0.012 |
| hoxc5a | 0.073 | otx2b | -0.012 |
| dhrs3b | 0.068 | si:ch73-281n10.2 | -0.011 |
| hoxc4a | 0.065 | si:ch211-152c2.3 | -0.011 |
| hoxb3a | 0.064 | ywhag1 | -0.011 |
| hoxa3a | 0.063 | otx1 | -0.011 |
| LOC108183671 | 0.062 | mybbp1a | -0.011 |
| hoxb1b | 0.062 | si:dkey-239h2.3 | -0.011 |
| ly6m5 | 0.059 | stm | -0.011 |
| hoxc6a | 0.053 | ppm1g | -0.011 |
| si:dkey-81p22.11 | 0.052 | hmgn7 | -0.011 |
| si:dkey-282h22.5 | 0.048 | zic3 | -0.011 |
| tspan12 | 0.048 | ckmt1 | -0.011 |
| hand2 | 0.044 | otx2a | -0.011 |
| znf1055 | 0.042 | ppp1r14ba | -0.011 |
| vim | 0.042 | ddx18 | -0.011 |
| oacyl | 0.040 | nop58 | -0.011 |
| bmf1 | 0.040 | zc3h18 | -0.011 |
| CR751227.2 | 0.040 | irx1a | -0.010 |
| LOC100536144 | 0.039 | xpr1a | -0.010 |
| hoxd3a | 0.038 | atp1b3b | -0.010 |
| tlr1 | 0.038 | polr3gla | -0.010 |
| hoxd4a | 0.038 | ncl | -0.010 |
| hoxb7a | 0.038 | dynll2a | -0.010 |
| XLOC-016189 | 0.037 | utp11l | -0.010 |
| raraa | 0.037 | rsl1d1 | -0.010 |
| CU570889.1 | 0.036 | hirip3 | -0.010 |