| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zic1 | 0.533 | ebf3a | -0.067 |
| zic2a | 0.364 | ebf1a | -0.058 |
| zic5 | 0.364 | cplx2l | -0.057 |
| zic6 | 0.240 | rbfox1 | -0.054 |
| zic3 | 0.218 | ephb3 | -0.054 |
| si:ch211-69b22.5 | 0.217 | tmsb2 | -0.054 |
| fzd10 | 0.204 | gpm6ab | -0.053 |
| cdon | 0.184 | cbfa2t3 | -0.053 |
| gas1a | 0.176 | si:ch211-152c2.3 | -0.053 |
| mdka | 0.167 | nova1 | -0.053 |
| gsx2 | 0.165 | apela | -0.051 |
| clybl | 0.164 | id4 | -0.049 |
| gdf10a | 0.162 | apoc1 | -0.049 |
| boc | 0.161 | snap25a | -0.049 |
| fabp11a | 0.145 | zfhx3 | -0.048 |
| mdkb | 0.141 | sulf2b | -0.048 |
| prss35 | 0.140 | tmem59l | -0.048 |
| tnfrsf19 | 0.137 | uncx | -0.047 |
| axin2 | 0.132 | tnrc6c1 | -0.047 |
| pax3a | 0.127 | apoeb | -0.046 |
| BX469902.1 | 0.124 | stm | -0.046 |
| rspo3 | 0.122 | hspb1 | -0.046 |
| olig3 | 0.120 | eno2 | -0.045 |
| wls | 0.118 | robo2 | -0.045 |
| msx3 | 0.116 | sncb | -0.045 |
| cldn5a | 0.114 | syt2a | -0.045 |
| pdgfaa | 0.114 | stx1b | -0.044 |
| trabd2a | 0.111 | si:dkeyp-75h12.5 | -0.044 |
| zic2b | 0.111 | lhx1a | -0.044 |
| tpbga | 0.111 | pou5f3 | -0.043 |
| AL845362.1 | 0.110 | cplx2 | -0.043 |
| bcam | 0.110 | otpa | -0.043 |
| msx1b | 0.109 | hapln1a | -0.043 |
| gas1b | 0.105 | gata3 | -0.043 |
| XLOC-003690 | 0.104 | tmem178b | -0.043 |