| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zic1 | 0.359 | cadm3 | -0.061 |
| zic2a | 0.268 | h3f3a | -0.057 |
| zic5 | 0.217 | ppiab | -0.055 |
| si:ch211-69b22.5 | 0.199 | rps10 | -0.054 |
| zic6 | 0.169 | rorb | -0.053 |
| zic3 | 0.154 | foxg1b | -0.053 |
| sox19a | 0.151 | rpl37 | -0.051 |
| BX469902.1 | 0.145 | si:ch1073-429i10.3.1 | -0.051 |
| hspb1 | 0.140 | ptmaa | -0.050 |
| hepacama | 0.130 | ckbb | -0.048 |
| wls | 0.128 | pvalb2 | -0.043 |
| fabp7b | 0.127 | pvalb1 | -0.043 |
| shisa2a | 0.127 | gpm6aa | -0.043 |
| apoeb | 0.123 | zgc:114188 | -0.042 |
| msx3 | 0.121 | gpm6ab | -0.042 |
| atoh1c | 0.121 | hnrnpa0l | -0.041 |
| stm | 0.120 | actc1b | -0.041 |
| tpbga | 0.119 | atp5mc1 | -0.041 |
| aldob | 0.118 | COX3 | -0.041 |
| rspo3 | 0.117 | zgc:158463 | -0.041 |
| otx1 | 0.116 | neurod4 | -0.040 |
| si:ch211-152c2.3 | 0.116 | six6b | -0.040 |
| cxcr4a | 0.116 | zgc:153409 | -0.040 |
| cyp26a1 | 0.116 | gapdhs | -0.039 |
| zgc:114181 | 0.109 | mt-co2 | -0.039 |
| nr6a1a | 0.106 | hbbe1.3 | -0.038 |
| crtap | 0.105 | rps17 | -0.037 |
| wnt10b | 0.105 | mpp6b | -0.036 |
| otx2a | 0.103 | atp5f1b | -0.036 |
| hesx1 | 0.103 | sinhcafl | -0.036 |
| apoc1 | 0.102 | fabp7a | -0.036 |
| tdgf1 | 0.102 | btg1 | -0.035 |
| alcamb | 0.101 | mt-atp6 | -0.035 |
| COX7A2 | 0.101 | tuba1c | -0.035 |
| pprc1 | 0.101 | mt-nd1 | -0.034 |