| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zic1 | 0.562 | elavl3 | -0.103 |
| zic2a | 0.369 | hapln1a | -0.090 |
| zic5 | 0.328 | gng2 | -0.088 |
| zic3 | 0.298 | hoxb9a | -0.088 |
| fzd10 | 0.277 | ntn1a | -0.087 |
| BX469902.1 | 0.273 | myt1b | -0.086 |
| prss35 | 0.267 | h3f3d | -0.086 |
| gdf10a | 0.252 | tubb5 | -0.082 |
| AL845362.1 | 0.249 | ptmab | -0.081 |
| gsx2 | 0.243 | sp8b | -0.080 |
| clybl | 0.240 | zc4h2 | -0.080 |
| gas1a | 0.239 | stxbp1a | -0.080 |
| mdkb | 0.228 | myt1a | -0.078 |
| zic6 | 0.222 | si:ch211-222l21.1 | -0.077 |
| mdka | 0.216 | hoxa9a | -0.077 |
| boc | 0.204 | gng3 | -0.077 |
| si:dkey-183j2.10 | 0.196 | hoxd9a | -0.075 |
| si:ch211-66e2.5 | 0.185 | jagn1a | -0.074 |
| si:ch211-69b22.5 | 0.172 | nkx6.1 | -0.074 |
| lbx1b | 0.170 | LOC100537384 | -0.074 |
| smoc2 | 0.169 | stx1b | -0.072 |
| fabp7a | 0.169 | calm2a | -0.072 |
| sept8b | 0.169 | hoxb10a | -0.072 |
| f3a | 0.167 | hoxb7a | -0.072 |
| kirrel3l | 0.164 | ptmaa | -0.072 |
| msx3 | 0.159 | onecut1 | -0.072 |
| CR848047.1 | 0.156 | lin28a | -0.072 |
| zgc:92630 | 0.154 | elavl4 | -0.072 |
| cdon | 0.150 | vamp2 | -0.070 |
| atoh1c | 0.146 | tuba8l3 | -0.070 |
| cyp26b1 | 0.144 | pik3r3b | -0.070 |
| si:dkey-188g12.1 | 0.144 | zfhx3 | -0.069 |
| cxcl14 | 0.143 | sncb | -0.069 |
| sema3gb | 0.143 | snap25a | -0.069 |
| si:ch211-251b21.1 | 0.141 | sulf2a | -0.069 |