| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zic4 | 0.562 | elavl3 | -0.119 |
| zic2a | 0.448 | ntn1a | -0.119 |
| zic5 | 0.405 | gng2 | -0.109 |
| zic3 | 0.381 | sp8b | -0.106 |
| gdf10a | 0.351 | hapln1a | -0.101 |
| fzd10 | 0.345 | hoxb9a | -0.100 |
| prss35 | 0.332 | h3f3d | -0.100 |
| gas1a | 0.300 | stxbp1a | -0.098 |
| BX469902.1 | 0.295 | nkx6.1 | -0.098 |
| AL845362.1 | 0.290 | lin28a | -0.098 |
| gsx2 | 0.288 | jagn1a | -0.097 |
| mdkb | 0.286 | myt1b | -0.097 |
| clybl | 0.281 | tubb5 | -0.097 |
| mdka | 0.279 | onecut1 | -0.097 |
| boc | 0.268 | gng3 | -0.096 |
| zic6 | 0.266 | zc4h2 | -0.096 |
| msx3 | 0.254 | calm1a | -0.095 |
| cdon | 0.210 | stx1b | -0.095 |
| si:dkey-183j2.10 | 0.204 | cdx4 | -0.093 |
| si:ch211-66e2.5 | 0.200 | hoxa9a | -0.093 |
| fabp7a | 0.194 | sulf2b | -0.091 |
| sema3gb | 0.194 | myt1a | -0.091 |
| smoc2 | 0.190 | LOC100537384 | -0.090 |
| si:ch211-251b21.1 | 0.190 | hoxb10a | -0.090 |
| sept8b | 0.189 | tuba8l3 | -0.090 |
| kirrel3l | 0.189 | hoxa10b | -0.090 |
| neo1a | 0.188 | elavl4 | -0.090 |
| lbx1b | 0.187 | si:ch211-222l21.1 | -0.089 |
| CR848047.1 | 0.187 | ptmab | -0.089 |
| pdgfaa | 0.186 | snap25a | -0.088 |
| f3a | 0.184 | sncb | -0.088 |
| pax3a | 0.182 | cplx2 | -0.088 |
| wls | 0.180 | hoxb7a | -0.088 |
| wnt10b | 0.173 | vamp2 | -0.088 |
| nfia | 0.170 | onecut2 | -0.086 |