| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zic4 | 0.533 | si:ch211-152c2.3 | -0.084 |
| zic2a | 0.424 | hspb1 | -0.084 |
| zic5 | 0.416 | apela | -0.079 |
| zic3 | 0.258 | apoc1 | -0.074 |
| fzd10 | 0.231 | apoeb | -0.073 |
| zic6 | 0.227 | ephb3 | -0.070 |
| cdon | 0.204 | stm | -0.069 |
| si:ch211-69b22.5 | 0.204 | fzd7a | -0.067 |
| gas1a | 0.188 | pou5f3 | -0.065 |
| gdf10a | 0.187 | polr3gla | -0.065 |
| mdkb | 0.185 | s100a1 | -0.062 |
| gsx2 | 0.176 | crabp2b | -0.062 |
| olig3 | 0.170 | sulf2b | -0.061 |
| clybl | 0.166 | nr6a1a | -0.061 |
| mdka | 0.163 | cdx4 | -0.061 |
| boc | 0.161 | ebf3a | -0.059 |
| AL845362.1 | 0.153 | NC-002333.4 | -0.058 |
| prss35 | 0.149 | sfrp1a | -0.058 |
| draxin | 0.146 | sp5l | -0.058 |
| msx3 | 0.142 | sox21a | -0.057 |
| axin2 | 0.141 | CABZ01093502.1 | -0.057 |
| nebl | 0.137 | otpb | -0.057 |
| bcam | 0.136 | sp8b | -0.056 |
| msx1b | 0.136 | otpa | -0.056 |
| fabp11a | 0.134 | COX7A2 | -0.055 |
| zbtb18 | 0.128 | asb11 | -0.055 |
| gng8 | 0.128 | ebf1a | -0.054 |
| tnfrsf19 | 0.124 | her3 | -0.054 |
| pdgfaa | 0.124 | gata3 | -0.053 |
| rspo3 | 0.122 | nkx2.4b | -0.053 |
| pax3a | 0.119 | irx7 | -0.053 |
| zic2b | 0.118 | gata2a | -0.052 |
| BX469902.1 | 0.118 | nkx6.1 | -0.052 |
| casz1 | 0.118 | zmp:0000000624 | -0.052 |
| etv1 | 0.116 | add3b | -0.052 |