| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| si:dkey-183j2.10 | 0.190 | hoxc3a | -0.045 |
| exoc3l1 | 0.158 | hoxb9a | -0.045 |
| her11 | 0.147 | fabp3 | -0.044 |
| her5 | 0.137 | hoxb3a | -0.041 |
| nkx2.4b | 0.135 | gfap | -0.039 |
| nkx2.4a | 0.123 | hoxb8a | -0.038 |
| SP5 (1 of many) | 0.121 | elavl3 | -0.036 |
| BX571786.1 | 0.117 | hoxd3a | -0.036 |
| LOC110438239 | 0.107 | ptmaa | -0.035 |
| SPDEF | 0.099 | hoxa3a | -0.035 |
| LOC100148950 | 0.095 | hoxc9a | -0.035 |
| si:dkey-152b24.8 | 0.095 | si:ch73-265d7.2 | -0.035 |
| sp5a | 0.091 | nes | -0.032 |
| LOC100150116 | 0.085 | hoxd9a | -0.032 |
| si:dkeyp-44d3.1 | 0.085 | hoxa9a | -0.032 |
| si:ch73-7i4.2 | 0.081 | tmsb4x | -0.031 |
| kctd12.2 | 0.080 | hapln1a | -0.031 |
| s1pr5a | 0.079 | hoxc8a | -0.031 |
| id3 | 0.075 | hoxa9b | -0.030 |
| si:dkey-238o13.4 | 0.074 | sb:cb81 | -0.030 |
| il34 | 0.072 | gng2 | -0.029 |
| en1a | 0.072 | hoxb1b | -0.029 |
| gdf10b | 0.070 | vim | -0.029 |
| LOC103911482 | 0.069 | hoxc1a | -0.029 |
| nkx2.1 | 0.068 | tmeff1b | -0.029 |
| irx7 | 0.068 | hoxb7a | -0.029 |
| dclk3 | 0.066 | tuba1c | -0.029 |
| CU929150.2 | 0.066 | slc1a3a | -0.029 |
| LOC110438081 | 0.065 | hoxb10a | -0.029 |
| XLOC-023308 | 0.065 | plp1a | -0.029 |
| coro2ba | 0.065 | ptmab | -0.028 |
| lim2.5 | 0.065 | hoxa10b | -0.027 |
| wnt8b | 0.065 | meis1a | -0.027 |
| emx3 | 0.063 | meis2b | -0.027 |
| LOC798089 | 0.063 | tmsb | -0.027 |