| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| vasna | 0.182 | ptmaa | -0.060 |
| lmx1bb | 0.175 | hoxb9a | -0.058 |
| shha | 0.160 | hoxb3a | -0.055 |
| shhb | 0.158 | cdx4 | -0.053 |
| spon1b | 0.147 | hoxa10b | -0.049 |
| ntn1b | 0.143 | npm1a | -0.048 |
| clu | 0.142 | pax6b | -0.048 |
| arxa | 0.140 | hoxd3a | -0.047 |
| si:dkey-208c12.2 | 0.137 | ptmab | -0.047 |
| slit1b | 0.137 | hoxb8a | -0.047 |
| slit2 | 0.135 | hoxc3a | -0.046 |
| hpgd | 0.130 | sp8b | -0.046 |
| cxcl12b | 0.127 | sp8a | -0.044 |
| sparcl1 | 0.123 | nasp | -0.044 |
| lmx1ba | 0.120 | hoxb7a | -0.044 |
| ptgs2a | 0.118 | fen1 | -0.044 |
| rspo2 | 0.118 | pcna | -0.043 |
| urp2 | 0.115 | meis2b | -0.043 |
| foxa2 | 0.114 | hmgn7 | -0.043 |
| loxl5b | 0.112 | hoxb10a | -0.043 |
| tmem88b | 0.110 | hoxa9a | -0.042 |
| bcan | 0.107 | snu13b | -0.042 |
| foxa1 | 0.107 | mcm7 | -0.041 |
| srpx2 | 0.106 | hoxd9a | -0.041 |
| pmp22a | 0.101 | nop10 | -0.041 |
| npr3 | 0.101 | h3f3a | -0.041 |
| fgfr3 | 0.099 | hoxa9b | -0.040 |
| sema3bl | 0.097 | dut | -0.040 |
| bmp1a | 0.096 | si:ch73-1a9.3 | -0.040 |
| rgs3b | 0.096 | stmn1b | -0.039 |
| slit3 | 0.096 | mcm3 | -0.039 |
| fgfr4 | 0.095 | hoxd10a | -0.039 |
| rspo3 | 0.094 | hoxb1b | -0.038 |
| trabd2b | 0.094 | setb | -0.038 |
| wls | 0.093 | znfl2a | -0.038 |