| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| sp8b | 0.502 | krt91 | -0.283 |
| insl5a | 0.450 | gapdhs | -0.261 |
| hoxb10a | 0.444 | krtt1c19e | -0.257 |
| LOC101882251 | 0.441 | eef1da | -0.241 |
| cdx4 | 0.432 | rplp2 | -0.239 |
| sp9 | 0.426 | si:dkey-33c14.3 | -0.227 |
| hoxd9a | 0.425 | col1a1b | -0.226 |
| BX005254.3 | 0.423 | zgc:136930 | -0.223 |
| vcana | 0.422 | cxl34b.11 | -0.221 |
| hoxc3a | 0.420 | rbp4 | -0.219 |
| apoc1 | 0.419 | ahcy | -0.214 |
| hoxc8a | 0.415 | capns1a | -0.213 |
| hoxb7a | 0.411 | si:dkey-183i3.5 | -0.212 |
| tmeff1b | 0.409 | col1a2 | -0.206 |
| dlx5a | 0.403 | col14a1b | -0.199 |
| hoxb9a | 0.403 | col1a1a | -0.193 |
| tpm4a | 0.393 | aqp3a | -0.193 |
| ccdc3a | 0.388 | wu:fa03e10 | -0.189 |
| msx1b | 0.384 | anxa1a | -0.189 |
| nradd | 0.375 | pvalb1 | -0.188 |
| nid2a | 0.363 | lgals1l1 | -0.184 |
| hoxd10a | 0.363 | anxa2a | -0.184 |
| emx2 | 0.357 | col17a1a | -0.184 |
| mdka | 0.348 | epgn | -0.182 |
| dusp5 | 0.346 | postnb | -0.181 |
| XLOC-042222 | 0.344 | krt5 | -0.178 |
| tcf7 | 0.342 | rps29 | -0.178 |
| ssr3 | 0.340 | pvalb2 | -0.178 |
| bambib | 0.338 | capgb | -0.175 |
| cpa6 | 0.337 | aep1 | -0.174 |
| mllt3 | 0.336 | si:ch211-39i22.1 | -0.173 |
| her12 | 0.336 | rhbg | -0.172 |
| dlx3b | 0.334 | igfbp7 | -0.169 |
| lin28a | 0.329 | ak1 | -0.169 |
| hoxa10b | 0.325 | stmn1a | -0.161 |