| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| shha | 0.265 | hnrnpaba | -0.091 |
| spon1b | 0.263 | ptmab | -0.091 |
| twist2 | 0.261 | tubb2b | -0.090 |
| ntn1b | 0.261 | ptmaa | -0.087 |
| si:ch211-157b11.8 | 0.247 | sp8b | -0.087 |
| foxa1 | 0.246 | hoxb9a | -0.086 |
| slit2 | 0.237 | si:ch73-1a9.3 | -0.085 |
| matn3b | 0.233 | hoxb8a | -0.085 |
| col8a1a | 0.231 | hoxb3a | -0.083 |
| vasna | 0.223 | elavl3 | -0.080 |
| spon2a | 0.222 | h3f3d | -0.079 |
| sulf1 | 0.218 | hoxc3a | -0.077 |
| rspo3 | 0.217 | si:ch211-288g17.3 | -0.075 |
| kng1 | 0.212 | khdrbs1a | -0.074 |
| timp4.1 | 0.212 | marcksb | -0.074 |
| angpt1 | 0.212 | si:dkey-276j7.1 | -0.073 |
| pgfb | 0.209 | gas1b | -0.073 |
| foxa | 0.208 | hmgb1b | -0.073 |
| col5a1 | 0.208 | sp8a | -0.072 |
| shhb | 0.206 | tuba1c | -0.072 |
| sparcl1 | 0.205 | hmgb1a | -0.071 |
| fxyd1 | 0.205 | hoxd3a | -0.071 |
| foxa2 | 0.204 | tmeff1b | -0.071 |
| cxcl12b | 0.200 | pax3a | -0.071 |
| slit1b | 0.200 | pax6b | -0.071 |
| palm3 | 0.194 | pax6a | -0.070 |
| matn4 | 0.193 | hoxc9a | -0.070 |
| myl9a | 0.192 | h3f3a | -0.070 |
| ptx3a | 0.189 | hnrnpa0b | -0.069 |
| loxl5b | 0.189 | hsp90ab1 | -0.068 |
| col2a1a | 0.188 | calm2b | -0.067 |
| clu | 0.187 | hoxc8a | -0.067 |
| si:dkey-208c12.2 | 0.185 | sox3 | -0.066 |
| col9a3 | 0.184 | meis1b | -0.066 |
| ntd5 | 0.183 | gbx1 | -0.065 |