| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc4a | 0.096 | rpl37 | -0.063 |
| raraa | 0.095 | rps10 | -0.052 |
| hoxb1b | 0.094 | zgc:114188 | -0.050 |
| sp5l | 0.090 | mdka | -0.049 |
| hoxb3a | 0.085 | fabp7a | -0.049 |
| chrd | 0.080 | zgc:56493 | -0.049 |
| meis3 | 0.075 | en2b | -0.047 |
| si:ch211-152c2.3 | 0.073 | ahcy | -0.046 |
| hoxb5b | 0.072 | rps17 | -0.045 |
| pou5f3 | 0.071 | si:ch211-156b7.4 | -0.044 |
| hoxc1a | 0.071 | her15.1 | -0.044 |
| hspb1 | 0.071 | COX7A2 (1 of many) | -0.043 |
| nr6a1a | 0.068 | XLOC-003692 | -0.042 |
| NC-002333.4 | 0.068 | abhd6a | -0.040 |
| nucks1a | 0.067 | eef1da | -0.039 |
| crabp2b | 0.067 | CU467822.1 | -0.039 |
| cdx4 | 0.066 | her4.1 | -0.038 |
| tfap2a | 0.064 | dut | -0.038 |
| rbm4.3 | 0.064 | her4.2 | -0.038 |
| marcksb | 0.063 | sox1b | -0.036 |
| hyal2b | 0.063 | nkx2.4b | -0.036 |
| pkdccb | 0.063 | foxg1a | -0.036 |
| hnrnpub | 0.062 | si:dkey-151g10.6 | -0.036 |
| hoxa3a | 0.062 | cnpy1 | -0.035 |
| stm | 0.061 | h3f3a | -0.034 |
| apela | 0.061 | nkx2.4a | -0.034 |
| dact2 | 0.061 | msi1 | -0.033 |
| pbx4 | 0.060 | sod1 | -0.032 |
| BX927258.1 | 0.060 | zgc:101100 | -0.032 |
| hoxd4a | 0.060 | rps29 | -0.032 |
| marcksl1b | 0.059 | rplp1 | -0.032 |
| tardbp | 0.059 | nkx2.1 | -0.032 |
| anp32e | 0.058 | nme2b.1 | -0.031 |
| trim71 | 0.058 | XLOC-003689 | -0.031 |
| ilf3b | 0.057 | rrm2 | -0.031 |