| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nkx2.9 | 0.213 | mdkb | -0.146 |
| nkx2.2b | 0.205 | mdka | -0.139 |
| ntn1a | 0.192 | pax3a | -0.139 |
| foxa | 0.166 | gas1b | -0.111 |
| foxa2 | 0.140 | boc | -0.106 |
| nkx6.1 | 0.139 | gas1a | -0.097 |
| nkx2.2a | 0.134 | prss35 | -0.089 |
| phox2bb | 0.129 | hoxb8a | -0.088 |
| CABZ01075068.1 | 0.127 | CU467822.1 | -0.087 |
| sulf2b | 0.124 | kirrel3l | -0.087 |
| mpz | 0.124 | msx1b | -0.085 |
| ntn1b | 0.116 | fabp7a | -0.080 |
| col8a1a | 0.115 | si:ch211-251b21.1 | -0.079 |
| fzd8a | 0.113 | zic2a | -0.079 |
| ptch2 | 0.112 | hoxb9a | -0.078 |
| stox1 | 0.110 | pax7a | -0.077 |
| otx2a | 0.109 | robo4 | -0.075 |
| spon1b | 0.109 | dbx1b | -0.075 |
| helt | 0.108 | atp1a1b | -0.075 |
| sulf1 | 0.105 | zic1 | -0.074 |
| col11a1a | 0.104 | zic3 | -0.072 |
| si:ch211-165b10.3 | 0.102 | zic5 | -0.072 |
| hephl1a | 0.101 | CR848047.1 | -0.071 |
| gdf6b | 0.097 | fzd10 | -0.070 |
| sfrp5 | 0.097 | pvalb1 | -0.068 |
| foxa1 | 0.096 | scube2 | -0.067 |
| sfrp1a | 0.095 | slc1a2b | -0.066 |
| igf2b | 0.094 | gdf10a | -0.066 |
| cdaa | 0.093 | msx3 | -0.065 |
| XLOC-032526 | 0.092 | endouc | -0.063 |
| plp1b | 0.092 | hs6st1a | -0.062 |
| tbx20 | 0.091 | draxin | -0.061 |
| hspb1 | 0.091 | nell2a | -0.061 |
| aplnr2 | 0.091 | tnfrsf19 | -0.060 |
| foxj1a | 0.091 | pax7b | -0.060 |