| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nkx6.1 | 0.218 | ptmaa | -0.073 |
| ntn1a | 0.152 | stmn1b | -0.069 |
| nkx2.9 | 0.144 | rtn1a | -0.061 |
| sox21a | 0.122 | celf2 | -0.057 |
| ptch2 | 0.111 | ckbb | -0.054 |
| sox19a | 0.106 | gpm6ab | -0.053 |
| CABZ01075068.1 | 0.104 | pvalb1 | -0.053 |
| chrd | 0.103 | pvalb2 | -0.052 |
| foxb1b | 0.101 | atp6v0cb | -0.051 |
| hspb1 | 0.096 | gng3 | -0.051 |
| foxa2 | 0.095 | pax3a | -0.051 |
| irx7 | 0.094 | zic1 | -0.050 |
| her8a | 0.093 | rnasekb | -0.049 |
| foxb1a | 0.093 | rtn1b | -0.049 |
| sox3 | 0.092 | COX3 | -0.048 |
| trim71 | 0.089 | ppiab | -0.047 |
| sp8b | 0.087 | sncb | -0.047 |
| ptgdsb.1 | 0.086 | lhx9 | -0.046 |
| si:ch73-265d7.2 | 0.086 | tuba1c | -0.046 |
| pax8 | 0.086 | ywhag2 | -0.046 |
| foxa | 0.084 | fez1 | -0.046 |
| si:ch211-67e16.11 | 0.084 | vamp2 | -0.045 |
| rfx4 | 0.083 | actc1b | -0.045 |
| her11 | 0.080 | pax7a | -0.044 |
| helt | 0.080 | mab21l1 | -0.044 |
| fzd7a | 0.080 | calm1a | -0.044 |
| her5 | 0.079 | elavl3 | -0.043 |
| sdc4 | 0.079 | olfm1b | -0.043 |
| sb:cb81 | 0.079 | ppdpfb | -0.043 |
| nr6a1a | 0.079 | kdm6bb | -0.043 |
| gfap | 0.077 | zic2a | -0.043 |
| lig1 | 0.077 | map1aa | -0.042 |
| npm1a | 0.076 | atpv0e2 | -0.042 |
| shhb | 0.076 | CU467822.1 | -0.042 |
| hmgb2a | 0.076 | atp6v1e1b | -0.042 |