| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zic2b | 0.496 | gpm6aa | -0.238 |
| pax3a | 0.424 | ckbb | -0.203 |
| zic2a | 0.395 | rtn1a | -0.187 |
| zic5 | 0.385 | gapdhs | -0.185 |
| msx3 | 0.376 | tmsb | -0.180 |
| wnt11r | 0.371 | cotl1 | -0.179 |
| gdf10a | 0.367 | rnasekb | -0.169 |
| slc1a3a | 0.337 | gnao1a | -0.168 |
| msx2b | 0.323 | gpm6ab | -0.168 |
| cdh6 | 0.318 | elavl3 | -0.165 |
| BX248318.1 | 0.315 | gng3 | -0.163 |
| olig3 | 0.309 | elavl4 | -0.157 |
| nog1 | 0.301 | tuba1c | -0.154 |
| wnt10b | 0.293 | stmn1b | -0.153 |
| sfrp2 | 0.283 | si:dkeyp-75h12.5 | -0.152 |
| gas1a | 0.282 | sncb | -0.151 |
| fzd10 | 0.280 | atp6v0cb | -0.151 |
| notum1a | 0.269 | vamp2 | -0.150 |
| ednrab | 0.266 | ywhah | -0.150 |
| nradd | 0.263 | myt1b | -0.150 |
| pdgfaa | 0.254 | stx1b | -0.150 |
| col7a1l | 0.253 | slc1a2b | -0.149 |
| zic3 | 0.253 | gng2 | -0.148 |
| hoxc3a | 0.252 | stxbp1a | -0.146 |
| wls | 0.245 | calm1a | -0.146 |
| adamtsl5 | 0.245 | fez1 | -0.144 |
| hmgb2a | 0.242 | dpysl3 | -0.144 |
| si:dkey-102m7.3 | 0.242 | rtn1b | -0.142 |
| wu:fb97g03 | 0.241 | nova2 | -0.140 |
| adam8a | 0.241 | mllt11 | -0.140 |
| cdx4 | 0.239 | snap25a | -0.139 |
| lmx1a | 0.238 | cplx2 | -0.138 |
| col18a1a | 0.235 | syt2a | -0.138 |
| pmp22a | 0.234 | ntn1a | -0.137 |
| BX001014.2 | 0.232 | id4 | -0.136 |