| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| msx3 | 0.366 | fgfbp2b | -0.127 |
| msx2b | 0.278 | col11a2 | -0.095 |
| bambia | 0.276 | si:ch211-156j16.1 | -0.095 |
| cdon | 0.254 | ebf3a | -0.092 |
| fmoda | 0.253 | foxf2a | -0.092 |
| csf1b | 0.232 | foxc1b | -0.089 |
| alx4a | 0.228 | hpgd | -0.084 |
| csf1a | 0.224 | matn1 | -0.083 |
| tpbga | 0.221 | otos | -0.083 |
| zgc:114181 | 0.210 | emx2 | -0.083 |
| CR855375.3 | 0.203 | meis2b | -0.082 |
| caly | 0.202 | epyc | -0.082 |
| wnt11r | 0.200 | mia | -0.081 |
| adma | 0.199 | ptch2 | -0.081 |
| BX324132.3 | 0.198 | barx1 | -0.080 |
| fstl3 | 0.192 | acana | -0.078 |
| vcam1b | 0.190 | wwp2 | -0.078 |
| ttc36 | 0.190 | cnmd | -0.078 |
| thbs3b | 0.189 | col2a1a | -0.076 |
| ca6 | 0.184 | vwde | -0.075 |
| ism1 | 0.184 | snorc | -0.075 |
| zic1 | 0.181 | si:dkey-6n6.1 | -0.070 |
| tnmd | 0.177 | fzd8a | -0.068 |
| zfhx4 | 0.176 | si:ch211-251b21.1 | -0.068 |
| bhmt | 0.173 | wisp3 | -0.068 |
| msx1a | 0.173 | cxcl12a | -0.067 |
| alx1 | 0.169 | tnxba | -0.067 |
| twist3 | 0.163 | emilin3a | -0.066 |
| si:ch211-69b22.5 | 0.162 | aldh1a2 | -0.064 |
| pcbd1 | 0.162 | ptgdsa | -0.064 |
| tnfaip6 | 0.162 | pbx1b | -0.064 |
| axin2 | 0.162 | si:dkeyp-66d1.7 | -0.064 |
| wls | 0.161 | foxf2b | -0.063 |
| kitlga | 0.160 | foxf1 | -0.063 |
| ccdc80l2 | 0.157 | ppp1r1c | -0.062 |