| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| msx2b | 0.324 | otomp | -0.117 |
| msx3 | 0.212 | si:ch211-80h18.1 | -0.101 |
| cyp26c1 | 0.198 | stm | -0.100 |
| dlx3b | 0.190 | atp2b1a | -0.098 |
| inhbaa | 0.186 | eno1a | -0.095 |
| dlx2a | 0.185 | hmx2 | -0.092 |
| bambia | 0.181 | tspan13b | -0.091 |
| irx1a | 0.173 | atp1a3b | -0.086 |
| tfap2a | 0.172 | gpx2 | -0.086 |
| sostdc1a | 0.166 | cox6b1 | -0.086 |
| wnt9b | 0.166 | dnajc5b | -0.084 |
| dlx4b | 0.155 | pkma | -0.083 |
| id1 | 0.154 | CR925719.1 | -0.083 |
| dkk1b | 0.152 | si:ch73-15n15.3 | -0.083 |
| krt18b | 0.150 | rbm24a | -0.082 |
| pkhd1l1 | 0.145 | sfrp5 | -0.082 |
| smad9 | 0.143 | cox7c | -0.081 |
| krt8 | 0.143 | nptna | -0.081 |
| fxyd6l | 0.140 | sall3b | -0.081 |
| CT030188.1 | 0.137 | mdh1aa | -0.081 |
| cyp26a1 | 0.137 | calml4a | -0.081 |
| ackr3a | 0.136 | si:ch211-243g18.2 | -0.080 |
| nkx2.7 | 0.136 | cpn1 | -0.080 |
| gtpbp4 | 0.134 | calm1a | -0.080 |
| dlx5a | 0.134 | cd164l2 | -0.080 |
| mid1ip1b | 0.134 | gipc3 | -0.080 |
| rsl24d1 | 0.133 | lrrc73 | -0.079 |
| sox14 | 0.131 | osbpl1a | -0.079 |
| sox1b | 0.131 | atp1b2b | -0.079 |
| CT990561.1 | 0.131 | emb | -0.079 |
| gfra1b | 0.130 | ndufa4 | -0.078 |
| anxa11b | 0.130 | pvalb9 | -0.078 |
| sox11a | 0.129 | si:ch211-133n4.6 | -0.078 |
| id3 | 0.129 | hmx3a | -0.078 |
| si:ch73-335l21.4 | 0.127 | myo6b | -0.078 |