| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| atoh1a | 0.319 | xbp1 | -0.064 |
| wnt1 | 0.277 | ucmab | -0.062 |
| msx3 | 0.270 | si:dkey-31g6.6 | -0.060 |
| olig3 | 0.242 | fxyd1 | -0.059 |
| pax3a | 0.221 | si:dkey-6n6.1 | -0.059 |
| wnt8b | 0.219 | rrbp1b | -0.055 |
| atoh1b | 0.210 | epyc | -0.055 |
| wnt10b | 0.202 | mmp23bb | -0.054 |
| ucmaa | 0.183 | shha | -0.053 |
| msx2b | 0.183 | snorc | -0.052 |
| zgc:194392 | 0.182 | cpn1 | -0.052 |
| XLOC-003690 | 0.177 | foxa3 | -0.051 |
| crygmxl2 | 0.175 | nid1a | -0.051 |
| egr2b | 0.175 | matn3a | -0.050 |
| mir219-3 | 0.172 | gas2b | -0.048 |
| kcnj1a.5 | 0.170 | ehd2b | -0.048 |
| crb2a | 0.170 | susd5 | -0.047 |
| mdka | 0.167 | chad | -0.047 |
| hoxa2b | 0.163 | si:dkey-234i14.3 | -0.047 |
| FP101883.1 | 0.161 | golim4b | -0.046 |
| zswim2 | 0.161 | chadla | -0.046 |
| zic5 | 0.160 | mtus1b | -0.046 |
| her15.1 | 0.157 | wisp3 | -0.046 |
| pcdh1g32 | 0.157 | ppdpfa | -0.046 |
| ccdc166 | 0.157 | mxra8a | -0.045 |
| zic4 | 0.155 | krt5 | -0.045 |
| msi1 | 0.154 | plod1a | -0.045 |
| her4.2 | 0.154 | zgc:175280 | -0.044 |
| LOC110439905 | 0.153 | aplp2 | -0.044 |
| zbtb16b | 0.152 | slc38a5b | -0.044 |
| spef2 | 0.152 | scube2 | -0.044 |
| si:rp71-77l1.1 | 0.152 | slc3a2a | -0.044 |
| XLOC-003692 | 0.151 | cavin2b | -0.044 |
| XLOC-003689 | 0.151 | wfdc2 | -0.044 |
| dnali1 | 0.150 | ctgfa | -0.043 |