| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd3a | 0.416 | en2b | -0.151 |
| hoxa3a | 0.374 | otx2a | -0.121 |
| hoxc4a | 0.373 | ctnnb1 | -0.118 |
| hoxd4a | 0.350 | otx1 | -0.117 |
| meis2b | 0.342 | islr2 | -0.115 |
| meis1b | 0.336 | aldob | -0.115 |
| hoxb5b | 0.298 | otx2b | -0.109 |
| mab21l2 | 0.295 | stm | -0.105 |
| hoxc1a | 0.285 | tcf7l2 | -0.104 |
| znf503 | 0.283 | si:ch211-152c2.3 | -0.103 |
| raraa | 0.282 | en2a | -0.100 |
| hoxb2a | 0.275 | fbl | -0.100 |
| rarga | 0.263 | lef1 | -0.099 |
| CR751227.2 | 0.262 | dkc1 | -0.097 |
| hoxb5a | 0.258 | hspb1 | -0.097 |
| crabp1b | 0.252 | nop10 | -0.096 |
| si:ch73-386h18.1 | 0.239 | xpr1a | -0.093 |
| pik3r3b | 0.226 | emx2 | -0.092 |
| gbx1 | 0.218 | nop58 | -0.092 |
| tshz2 | 0.212 | apoc1 | -0.091 |
| BX322661.2 | 0.207 | gnl3 | -0.090 |
| znf703 | 0.205 | polr3gla | -0.090 |
| hoxc3a | 0.204 | npm1a | -0.089 |
| meis3 | 0.204 | pou5f3 | -0.088 |
| hoxb6a | 0.198 | gar1 | -0.088 |
| tshz3b | 0.195 | shisa2a | -0.087 |
| hoxb6b | 0.191 | rsl1d1 | -0.087 |
| scrt1a | 0.191 | ddx18 | -0.085 |
| tshz1 | 0.191 | mir181b-3 | -0.084 |
| mafba | 0.188 | snu13b | -0.084 |
| lbx1a | 0.186 | nop2 | -0.084 |
| rxrga | 0.186 | apoeb | -0.084 |
| gdf11 | 0.177 | irx7 | -0.084 |
| si:ch211-57n23.4 | 0.177 | zmp:0000000624 | -0.084 |
| hoxc5a | 0.174 | fezf2 | -0.084 |