| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd4a | 0.296 | cthrc1a | -0.156 |
| hoxa3a | 0.274 | col2a1a | -0.132 |
| hoxb5a | 0.229 | cnmd | -0.129 |
| meis3 | 0.229 | col9a2 | -0.129 |
| meis2b | 0.202 | col11a1a | -0.127 |
| hoxb1b | 0.195 | col9a1a | -0.127 |
| hoxb8a | 0.192 | col9a3 | -0.123 |
| znf503 | 0.192 | matn4 | -0.122 |
| hoxc1a | 0.186 | fxyd1 | -0.116 |
| hoxb5b | 0.184 | col2a1b | -0.113 |
| hoxb6a | 0.180 | col11a2 | -0.108 |
| meis1a | 0.180 | VIT | -0.105 |
| hoxd3a | 0.179 | otos | -0.103 |
| hand2 | 0.171 | bhmt | -0.103 |
| CR751227.2 | 0.170 | tbx15 | -0.100 |
| tmem88b | 0.168 | pcbd1 | -0.094 |
| hoxc3a | 0.168 | tnn | -0.092 |
| meis1b | 0.164 | ttc36 | -0.089 |
| foxf1 | 0.160 | epyc | -0.087 |
| barx1 | 0.156 | tgfbi | -0.087 |
| hoxb2a | 0.143 | hpdb | -0.086 |
| foxf2a | 0.143 | BX324132.3 | -0.085 |
| lhx6 | 0.139 | dcn | -0.085 |
| hoxb6b | 0.134 | col11a1b | -0.083 |
| BX469925.3 | 0.133 | foxl2a | -0.082 |
| si:ch211-222l21.1 | 0.129 | AL929222.2 | -0.082 |
| gata5 | 0.127 | tnc | -0.081 |
| rbp5 | 0.125 | gyg1b | -0.079 |
| CABZ01075068.1 | 0.124 | CYTL1 | -0.078 |
| zgc:56699 | 0.123 | tgfb3 | -0.077 |
| BX322661.2 | 0.122 | pdgfrl | -0.077 |
| sfrp2 | 0.119 | itga10 | -0.077 |
| tmem98 | 0.117 | zgc:158423 | -0.074 |
| col7a1l | 0.115 | hgd | -0.073 |
| jam2b | 0.114 | glula | -0.073 |