| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| BX469925.3 | 0.272 | col9a1a | -0.121 |
| tmem88b | 0.248 | col2a1a | -0.116 |
| meis3 | 0.237 | col9a2 | -0.115 |
| CABZ01075068.1 | 0.235 | rarga | -0.111 |
| hoxb5b | 0.227 | fibina | -0.110 |
| hoxc3a | 0.218 | fgfbp2b | -0.101 |
| hoxc1a | 0.212 | col9a3 | -0.100 |
| hoxb6b | 0.208 | cnmd | -0.097 |
| hoxb8a | 0.204 | ecrg4a | -0.096 |
| wu:fb97g03 | 0.204 | col2a1b | -0.091 |
| hoxb3a | 0.195 | foxc1b | -0.091 |
| hoxb9a | 0.194 | eef1da | -0.088 |
| BX001014.2 | 0.191 | col11a2 | -0.087 |
| fbn2a.1 | 0.191 | dlx5a | -0.084 |
| col7a1l | 0.172 | sox9a | -0.083 |
| jam2b | 0.172 | six1a | -0.083 |
| cfd | 0.167 | VIT | -0.081 |
| dhrs3b | 0.166 | LO018188.1 | -0.081 |
| lin28a | 0.165 | CU929237.1 | -0.080 |
| gata5 | 0.162 | col11a1a | -0.078 |
| tmem108 | 0.160 | rplp2 | -0.076 |
| hoxb8b | 0.157 | sparc | -0.074 |
| cdx4 | 0.157 | sod1 | -0.073 |
| hoxb5a | 0.153 | tgfb3 | -0.072 |
| emilin2b | 0.152 | pvalb1 | -0.072 |
| cyp26a1 | 0.151 | six2a | -0.071 |
| ripply3 | 0.151 | otos | -0.070 |
| shisa2a | 0.149 | dlx3b | -0.069 |
| nr6a1a | 0.148 | fxyd1 | -0.069 |
| hoxb6a | 0.148 | col8a2 | -0.069 |
| si:dkey-195m11.8 | 0.146 | dlx4a | -0.068 |
| hoxb7a | 0.146 | COX3 | -0.068 |
| isl2b | 0.146 | matn1 | -0.067 |
| XLOC-001964 | 0.145 | KCTD15 | -0.067 |
| hoxc6b | 0.143 | epyc | -0.066 |