| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| vox | 0.237 | hbae1.1 | -0.081 |
| hoxb10a | 0.212 | hbbe1.3 | -0.081 |
| BX005254.3 | 0.209 | hbae3 | -0.078 |
| her7 | 0.196 | hbbe2 | -0.078 |
| tbxtb | 0.193 | prdx2 | -0.076 |
| tbxta | 0.191 | hbbe1.1 | -0.075 |
| lin28a | 0.187 | hbae1.3 | -0.074 |
| hoxb7a | 0.185 | cahz | -0.069 |
| fbln1 | 0.184 | blvrb | -0.068 |
| her1 | 0.182 | tspo | -0.065 |
| cx43.4 | 0.178 | hemgn | -0.065 |
| cdx4 | 0.178 | hbbe1.2 | -0.064 |
| fgf10b | 0.173 | slc4a1a | -0.061 |
| hoxc3a | 0.173 | si:ch211-250g4.3 | -0.060 |
| lsp1 | 0.170 | alas2 | -0.060 |
| ripply2 | 0.168 | creg1 | -0.057 |
| wnt2bb | 0.161 | nt5c2l1 | -0.056 |
| hoxa11b | 0.160 | epb41b | -0.053 |
| hoxa10b | 0.159 | gpx1a | -0.052 |
| wnt5b | 0.158 | pvalb1 | -0.052 |
| fbn2a.1 | 0.158 | plac8l1 | -0.051 |
| sall4 | 0.156 | si:ch211-207c6.2 | -0.050 |
| BX001014.2 | 0.155 | zgc:163057 | -0.049 |
| npas4l | 0.155 | tmod4 | -0.048 |
| tbx16 | 0.153 | nmt1b | -0.048 |
| apela | 0.151 | pvalb2 | -0.048 |
| dact2 | 0.150 | sod1 | -0.048 |
| hoxd10a | 0.148 | tmem14ca | -0.046 |
| msgn1 | 0.143 | actc1b | -0.045 |
| il17rd | 0.140 | fth1a | -0.043 |
| etv2 | 0.140 | sptb | -0.042 |
| hes6 | 0.137 | si:ch211-227m13.1 | -0.042 |
| hoxa11a | 0.136 | hbae5 | -0.041 |
| hoxa9a | 0.135 | add2 | -0.041 |
| vcana | 0.134 | klf1 | -0.041 |