| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| XLOC-019859 | 0.490 | hspb1 | -0.098 |
| XLOC-007078 | 0.487 | tuba8l2 | -0.095 |
| foxl2b | 0.430 | apoc1 | -0.076 |
| stc2b | 0.405 | BX927258.1 | -0.073 |
| ret | 0.400 | apoeb | -0.072 |
| tbx1 | 0.379 | tcf15 | -0.070 |
| tcf21 | 0.371 | cdx4 | -0.068 |
| msc | 0.320 | aldoaa | -0.066 |
| foxl2a | 0.281 | serpinh1b | -0.066 |
| pdgfc | 0.244 | hoxb7a | -0.064 |
| lhx2b | 0.240 | arid3c | -0.060 |
| hlx1 | 0.229 | hoxc3a | -0.060 |
| isl2a | 0.214 | hes6 | -0.059 |
| LOC108192140 | 0.208 | asph | -0.059 |
| rdh8a | 0.200 | XLOC-042222 | -0.059 |
| ptprz1b | 0.195 | si:dkey-16p21.8 | -0.058 |
| nkx3.3 | 0.192 | sp5l | -0.058 |
| isl2b | 0.192 | hoxc8a | -0.057 |
| fam69c | 0.188 | hoxb9a | -0.057 |
| fgd4a | 0.188 | ppp1r3b | -0.057 |
| tuba8l3 | 0.182 | tob1a | -0.056 |
| phlda2 | 0.178 | fn1b | -0.056 |
| shox | 0.175 | vox | -0.056 |
| tmem98 | 0.174 | BX001014.2 | -0.055 |
| nkx2.3 | 0.171 | tbx16 | -0.055 |
| notch3 | 0.168 | fstl1a | -0.055 |
| ebf1a | 0.166 | nradd | -0.054 |
| si:ch211-263k4.2 | 0.161 | lpar1 | -0.054 |
| pitx3 | 0.153 | arid3b | -0.054 |
| nova2 | 0.152 | efnb2b | -0.054 |
| barx2 | 0.152 | msgn1 | -0.053 |
| fbln5 | 0.151 | cx43.4 | -0.053 |
| irx2a | 0.151 | rbp7b | -0.053 |
| dkk3b | 0.148 | angptl7 | -0.053 |
| col18a1b | 0.148 | nr6a1a | -0.052 |