| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zgc:101100 | 0.113 | hoxb3a | -0.061 |
| otx1 | 0.113 | hoxb9a | -0.060 |
| LOC110438288 | 0.095 | hoxc3a | -0.056 |
| irx1a | 0.091 | hoxb8a | -0.051 |
| pvalb9 | 0.090 | hoxc9a | -0.047 |
| otx2a | 0.088 | hoxb1b | -0.046 |
| dmbx1b | 0.086 | hoxd3a | -0.046 |
| rs1a | 0.086 | hoxb7a | -0.045 |
| ca4a | 0.085 | hoxd9a | -0.045 |
| otx2b | 0.085 | hoxa9a | -0.044 |
| slc1a2b | 0.084 | hoxc8a | -0.043 |
| gnb3a | 0.083 | hsp90ab1 | -0.043 |
| tacr3a | 0.083 | hoxa9b | -0.042 |
| CABZ01038709.1 | 0.081 | si:ch73-386h18.1 | -0.042 |
| LOC103909284 | 0.081 | hoxb10a | -0.041 |
| podxl | 0.081 | si:ch211-222l21.1 | -0.041 |
| slc6a1b | 0.080 | si:ch73-265d7.2 | -0.041 |
| ptn | 0.080 | hoxa10b | -0.040 |
| rspo1 | 0.079 | rpl19 | -0.040 |
| dmrta2 | 0.079 | elavl3 | -0.039 |
| en2b | 0.078 | cdkn1ca | -0.039 |
| gabrr2a | 0.077 | vim | -0.038 |
| LOC103911728 | 0.077 | hoxa3a | -0.038 |
| fgfr2 | 0.077 | meis1b | -0.037 |
| nyx | 0.077 | rps5 | -0.037 |
| aqp1a.1 | 0.076 | col28a2a | -0.037 |
| rbp5 | 0.075 | gfap | -0.036 |
| zgc:153395 | 0.075 | rplp0 | -0.036 |
| RIC3 | 0.075 | cirbpb | -0.036 |
| nrn1lb | 0.075 | slc1a3a | -0.036 |
| zgc:165461 | 0.074 | meis1a | -0.036 |
| cdo1 | 0.074 | LOC100537384 | -0.035 |
| abi3a | 0.073 | myt1b | -0.035 |
| pcp4l1 | 0.072 | hoxd10a | -0.035 |
| syt5b | 0.071 | pik3r3b | -0.035 |