Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| alx1 | 0.363 | meis1a | -0.103 |
| msx1b | 0.198 | mab21l2 | -0.095 |
| foxl2a | 0.198 | hoxb3a | -0.085 |
| alx4a | 0.197 | meis1b | -0.084 |
| vwa1 | 0.188 | barx1 | -0.080 |
| cldn11a | 0.172 | hand2 | -0.079 |
| cd248b | 0.170 | dlx5a | -0.076 |
| six1a | 0.160 | mdkb | -0.068 |
| si:ch211-267e7.3 | 0.158 | hoxa2b | -0.068 |
| tnn | 0.158 | vwde | -0.067 |
| csf1a | 0.157 | ptmaa | -0.067 |
| gata2a | 0.156 | dlx2a | -0.066 |
| akap12b | 0.154 | meis2b | -0.065 |
| tjp1a | 0.153 | dlx3b | -0.064 |
| gstt1a | 0.151 | mab21l1 | -0.063 |
| cthrc1a | 0.149 | dlx4a | -0.062 |
| ephb3a | 0.147 | dlx1a | -0.061 |
| tgfbi | 0.146 | si:ch211-156j16.1 | -0.060 |
| msx3 | 0.144 | znf503 | -0.060 |
| vcam1b | 0.142 | hoxa3a | -0.055 |
| tnc | 0.141 | ier2b | -0.054 |
| col4a5 | 0.140 | dlx4b | -0.054 |
| foxl2b | 0.140 | hoxc3a | -0.053 |
| slc29a1a | 0.138 | tuba8l2 | -0.052 |
| postnb | 0.134 | rpl39 | -0.052 |
| tbx15 | 0.128 | meis2a | -0.051 |
| csf1b | 0.127 | gsc | -0.051 |
| gpr143 | 0.122 | crabp1b | -0.051 |
| alx4b | 0.119 | hoxd4a | -0.049 |
| myh10 | 0.117 | nr2f1b | -0.049 |
| cygb1 | 0.116 | lhx6 | -0.049 |
| fibina | 0.115 | hpgd | -0.048 |
| col4a6 | 0.114 | hoxb2a | -0.048 |
| tuba8l3 | 0.112 | hoxd9a | -0.048 |
| si:dkeyp-44a8.4 | 0.110 | dlx6a | -0.048 |