Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| alx1 | 0.175 | tuba1c | -0.025 |
| pmp22a | 0.098 | tuba1a | -0.024 |
| XLOC-009289 | 0.095 | nova2 | -0.022 |
| twist1a | 0.092 | mdkb | -0.021 |
| fli1a | 0.083 | ptmab | -0.020 |
| inka1a | 0.081 | elavl3 | -0.020 |
| cd248b | 0.072 | gpm6aa | -0.020 |
| krt18b | 0.071 | stmn1b | -0.019 |
| alx4a | 0.070 | rtn1a | -0.018 |
| foxc1a | 0.070 | si:dkey-276j7.1 | -0.017 |
| alx4b | 0.069 | marcksb | -0.016 |
| tmem119b | 0.066 | sncb | -0.016 |
| pdgfra | 0.062 | elavl4 | -0.016 |
| zmp:0000001031 | 0.062 | pou3f3b | -0.016 |
| col15a1a | 0.061 | si:dkey-56m19.5 | -0.016 |
| gdf5 | 0.061 | sox3 | -0.015 |
| thbs3b | 0.059 | ckbb | -0.015 |
| mmp14a | 0.058 | gng3 | -0.014 |
| ccr11.1 | 0.057 | vamp2 | -0.014 |
| foxc1b | 0.057 | si:ch211-288g17.3 | -0.014 |
| trim35-9 | 0.057 | tmsb | -0.014 |
| col12a1a | 0.057 | rnasekb | -0.014 |
| colec12 | 0.055 | nova1 | -0.014 |
| si:ch211-285c6.6 | 0.055 | sox19a | -0.014 |
| si:dkey-222h21.2 | 0.055 | gnb1b | -0.014 |
| ednrab | 0.055 | hmgb3a | -0.014 |
| si:dkey-23i12.7 | 0.055 | hnrnpa0a | -0.014 |
| lum | 0.054 | hmgn3 | -0.014 |
| col11a1b | 0.054 | atp6v0cb | -0.014 |
| col4a2 | 0.054 | fez1 | -0.013 |
| col5a1 | 0.052 | hmgb1b | -0.013 |
| col4a1 | 0.051 | chd4a | -0.013 |
| htra3b | 0.051 | pou3f1 | -0.013 |
| six1a | 0.050 | stxbp1a | -0.013 |
| tgfbi | 0.049 | cspg5a | -0.013 |