| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxa13b | 0.184 | pitx2 | -0.116 |
| hoxb10a | 0.178 | shisa2a | -0.107 |
| hes6 | 0.171 | klf17 | -0.105 |
| hoxd12a | 0.162 | otx2a | -0.099 |
| cdx4 | 0.161 | frzb | -0.099 |
| nradd | 0.160 | gsc | -0.098 |
| fgf8a | 0.159 | zgc:174153 | -0.097 |
| her12 | 0.156 | fzd8b | -0.090 |
| wnt5b | 0.151 | calr3b | -0.088 |
| gdf11 | 0.146 | epcam | -0.088 |
| her15.1 | 0.142 | ctslb | -0.087 |
| her9 | 0.141 | si:dkey-239j18.2 | -0.087 |
| hoxd10a | 0.139 | si:dkey-269i1.4 | -0.086 |
| hoxb3a | 0.137 | otx1 | -0.084 |
| CR751227.2 | 0.135 | ripply1 | -0.082 |
| XLOC-042222 | 0.134 | six3b | -0.079 |
| XLOC-003690 | 0.134 | si:dkey-239j18.3 | -0.079 |
| zgc:162939 | 0.132 | pprc1 | -0.079 |
| rarga | 0.131 | chrd | -0.079 |
| itm2cb | 0.129 | stard10 | -0.078 |
| lrrc17 | 0.127 | tram1 | -0.078 |
| tbxta | 0.127 | he1.2 | -0.077 |
| BX927327.1 | 0.127 | elovl6 | -0.076 |
| aplnr2 | 0.126 | si:ch73-160h15.3 | -0.076 |
| tagln3b | 0.126 | si:ch211-173m16.2 | -0.075 |
| hoxc12b | 0.125 | mctp2b | -0.074 |
| si:dkey-235d18.5 | 0.125 | prdm1a | -0.072 |
| hoxd13a | 0.124 | spint2 | -0.072 |
| opn7b | 0.124 | h1m | -0.071 |
| hoxa9a | 0.124 | six7 | -0.070 |
| her2 | 0.123 | sec61b | -0.070 |
| hoxd11a | 0.123 | arfgap3 | -0.070 |
| hoxc13a | 0.123 | si:ch211-163l21.8 | -0.068 |
| LOC101884647 | 0.122 | cldnh | -0.068 |
| hoxa10b | 0.119 | ap1s3b | -0.068 |