| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| meis1b | 0.225 | en2b | -0.080 |
| meis2b | 0.214 | otx2a | -0.063 |
| hoxb3a | 0.205 | foxg1a | -0.056 |
| hoxb2a | 0.169 | islr2 | -0.055 |
| hoxa2b | 0.156 | otx2b | -0.055 |
| mab21l2 | 0.149 | otx1 | -0.054 |
| rarga | 0.146 | fezf2 | -0.053 |
| hoxd3a | 0.145 | shisa2a | -0.051 |
| meis2a | 0.139 | en2a | -0.050 |
| znf503 | 0.138 | mir181b-3 | -0.050 |
| meis3 | 0.135 | tcf7l2 | -0.048 |
| pik3r3b | 0.117 | six3b | -0.048 |
| hoxc4a | 0.115 | xpr1a | -0.047 |
| si:ch73-386h18.1 | 0.115 | nkx2.4b | -0.047 |
| egr2a | 0.104 | si:ch211-156b7.4 | -0.045 |
| evx1 | 0.104 | six3a | -0.045 |
| hoxd4a | 0.103 | nr2e1 | -0.043 |
| hoxa3a | 0.103 | eef1da | -0.043 |
| sox7 | 0.102 | emx2 | -0.042 |
| roraa | 0.098 | nkx2.1 | -0.042 |
| gdf11 | 0.097 | nop10 | -0.041 |
| nr2f1a | 0.097 | dlx2a | -0.041 |
| raraa | 0.096 | nkx2.4a | -0.040 |
| pbx4 | 0.095 | fbl | -0.040 |
| egfl6 | 0.095 | tenm3 | -0.039 |
| tshz2 | 0.094 | emx3 | -0.039 |
| egr2b | 0.093 | zgc:101100 | -0.039 |
| tshz3b | 0.092 | dlx1a | -0.038 |
| gbx1 | 0.090 | fezf1 | -0.038 |
| meis1a | 0.089 | ahcy | -0.038 |
| scrt1a | 0.089 | mif | -0.038 |
| evx2 | 0.088 | arxa | -0.038 |
| mafba | 0.088 | cnpy1 | -0.038 |
| CABZ01075068.1 | 0.087 | aldob | -0.037 |
| tmeff1b | 0.084 | ctnnb1 | -0.036 |