| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb3a | 0.283 | shisa2a | -0.074 |
| meis2b | 0.259 | sfrp1a | -0.069 |
| meis1b | 0.239 | foxg1a | -0.068 |
| mab21l2 | 0.220 | si:ch1073-80i24.3 | -0.065 |
| hoxd3a | 0.188 | en2b | -0.064 |
| hoxd4a | 0.180 | stm | -0.062 |
| hoxa3a | 0.170 | sox1b | -0.060 |
| meis2a | 0.168 | irx7 | -0.060 |
| meis3 | 0.157 | si:ch211-152c2.3 | -0.060 |
| CT025897.1 | 0.151 | nnr | -0.056 |
| rarga | 0.148 | polr3gla | -0.055 |
| hoxb2a | 0.145 | emx2 | -0.053 |
| raraa | 0.142 | slc6a1a | -0.053 |
| hoxc4a | 0.140 | nkx2.1 | -0.052 |
| znf703 | 0.138 | islr2 | -0.052 |
| pik3r3b | 0.126 | LOC108190024 | -0.052 |
| si:ch73-386h18.1 | 0.120 | pknox2 | -0.051 |
| zfhx4 | 0.114 | asb11 | -0.049 |
| wnt11r | 0.112 | pou5f3 | -0.049 |
| hoxc1a | 0.111 | NC-002333.4 | -0.049 |
| rxrga | 0.109 | add3b | -0.049 |
| zfhx3 | 0.108 | six3b | -0.049 |
| evx1 | 0.108 | xpr1a | -0.049 |
| BX322661.2 | 0.107 | slc6a1b | -0.048 |
| CABZ01075068.1 | 0.107 | pkdccb | -0.048 |
| nr2f1a | 0.106 | scg2a | -0.047 |
| crabp1b | 0.106 | sox1a | -0.047 |
| crabp2a | 0.104 | nfixb | -0.047 |
| CR751227.2 | 0.102 | si:ch73-30b17.2 | -0.047 |
| fabp3 | 0.101 | en2a | -0.046 |
| hunk | 0.098 | LOC103909284 | -0.045 |
| h3f3a | 0.097 | kctd4 | -0.045 |
| gas1a | 0.097 | fxyd6 | -0.045 |
| hoxc3a | 0.095 | LO017848.1 | -0.044 |
| mafba | 0.095 | CU467822.1 | -0.044 |