| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| meis1a | 0.209 | col2a1a | -0.127 |
| hoxb3a | 0.192 | col9a1a | -0.123 |
| meis1b | 0.163 | col9a2 | -0.119 |
| hoxa2b | 0.133 | col11a2 | -0.116 |
| mab21l2 | 0.132 | col9a3 | -0.114 |
| hoxa3a | 0.126 | col11a1a | -0.108 |
| meis2a | 0.122 | VIT | -0.107 |
| meis2b | 0.119 | cnmd | -0.105 |
| col5a2a | 0.118 | mia | -0.100 |
| hoxd4a | 0.118 | cthrc1a | -0.091 |
| hoxb2a | 0.112 | snorc | -0.091 |
| rbp5 | 0.110 | tbx15 | -0.089 |
| sult1st1 | 0.108 | epyc | -0.088 |
| col1a1b | 0.106 | acana | -0.088 |
| marcksl1a | 0.100 | fgfbp2b | -0.086 |
| tmem119b | 0.100 | hapln1b | -0.083 |
| hoxb1b | 0.099 | matn1 | -0.081 |
| pmp22a | 0.099 | wisp3 | -0.081 |
| hspa8 | 0.099 | ucmab | -0.081 |
| mfap2 | 0.098 | si:dkey-6n6.1 | -0.080 |
| col1a2 | 0.097 | tnxba | -0.080 |
| hand2 | 0.095 | fxyd1 | -0.078 |
| barx1 | 0.093 | otos | -0.078 |
| wnt11r | 0.093 | AL929222.2 | -0.075 |
| meis3 | 0.092 | ptgdsa | -0.074 |
| hpgd | 0.091 | ppp1r1c | -0.073 |
| ier5l | 0.090 | si:dkey-19b23.8 | -0.072 |
| twist2 | 0.089 | pcolceb | -0.072 |
| twist1b | 0.089 | sox9a | -0.068 |
| si:ch211-286o17.1 | 0.086 | sept8b | -0.066 |
| fxyd6l | 0.086 | si:ch211-106h11.3 | -0.066 |
| zic1 | 0.085 | itga10 | -0.066 |
| emilin2b | 0.085 | zgc:162879 | -0.066 |
| twist1a | 0.084 | eps8l2 | -0.065 |
| ptx3a | 0.084 | emilin3a | -0.065 |