| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zic2a | 0.554 | ebf3a | -0.078 |
| zic1 | 0.416 | nova1 | -0.066 |
| zic4 | 0.364 | ebf1a | -0.066 |
| zic6 | 0.227 | cbfa2t3 | -0.065 |
| zic3 | 0.217 | id4 | -0.064 |
| nebl | 0.200 | zfhx3 | -0.063 |
| fzd10 | 0.193 | mab21l2 | -0.063 |
| cdon | 0.191 | tnrc6c1 | -0.060 |
| msx1b | 0.190 | meis2a | -0.060 |
| si:ch211-69b22.5 | 0.186 | gpm6ab | -0.060 |
| clybl | 0.185 | thsd7aa | -0.060 |
| slc17a7a | 0.172 | rbfox1 | -0.059 |
| gas1a | 0.166 | robo2 | -0.059 |
| BX469902.1 | 0.160 | tfap2a | -0.058 |
| neurod2 | 0.157 | cadm4 | -0.056 |
| olig3 | 0.155 | pik3r3b | -0.056 |
| gdf10a | 0.155 | hapln1a | -0.056 |
| mdka | 0.150 | cplx2l | -0.056 |
| fabp11a | 0.147 | pbx3b | -0.056 |
| boc | 0.146 | scrt1a | -0.054 |
| msx3 | 0.145 | nsg2 | -0.054 |
| axin2 | 0.143 | stm | -0.054 |
| wls | 0.142 | si:ch211-152c2.3 | -0.053 |
| zic2b | 0.140 | uncx | -0.053 |
| bcam | 0.139 | gdf11 | -0.051 |
| fat2 | 0.135 | syt2a | -0.051 |
| pdgfaa | 0.133 | rtn1a | -0.051 |
| mdkb | 0.132 | slc32a1 | -0.051 |
| rspo3 | 0.132 | gabrb4 | -0.051 |
| cldn5a | 0.132 | tmsb2 | -0.050 |
| gng8 | 0.131 | si:ch73-386h18.1 | -0.050 |
| pax3a | 0.129 | tox2 | -0.049 |
| trabd2a | 0.129 | slc6a1b | -0.049 |
| tnfrsf19 | 0.129 | sulf2b | -0.048 |
| atoh8 | 0.129 | tmem59l | -0.048 |