| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zic2a | 0.537 | elavl3 | -0.154 |
| zic1 | 0.405 | rtn1a | -0.132 |
| msx1b | 0.385 | myt1b | -0.132 |
| gdf10a | 0.349 | gng2 | -0.124 |
| zic3 | 0.334 | ntn1a | -0.118 |
| zic4 | 0.328 | gng3 | -0.117 |
| BX469902.1 | 0.324 | tuba1c | -0.115 |
| msx3 | 0.300 | stx1b | -0.111 |
| fzd10 | 0.296 | stxbp1a | -0.110 |
| zic2b | 0.283 | myt1a | -0.110 |
| clybl | 0.272 | tmeff1b | -0.110 |
| zic6 | 0.262 | nova2 | -0.108 |
| gas1a | 0.261 | elavl4 | -0.108 |
| pax3a | 0.244 | hapln1a | -0.108 |
| wnt10b | 0.239 | gpm6aa | -0.107 |
| wls | 0.225 | syt2a | -0.107 |
| cdh6 | 0.225 | tubb5 | -0.105 |
| boc | 0.212 | vamp2 | -0.105 |
| cdon | 0.206 | sncb | -0.105 |
| adamtsl5 | 0.204 | jagn1a | -0.105 |
| mdka | 0.204 | si:dkey-276j7.1 | -0.105 |
| lmx1a | 0.203 | calm1a | -0.105 |
| prss35 | 0.199 | snap25a | -0.103 |
| atoh8 | 0.198 | cotl1 | -0.102 |
| pdgfaa | 0.197 | dpysl3 | -0.102 |
| nog1 | 0.190 | tmsb4x | -0.102 |
| msx2b | 0.189 | sulf2b | -0.102 |
| mdkb | 0.189 | cplx2 | -0.101 |
| olig3 | 0.188 | rtn1b | -0.100 |
| axin2 | 0.182 | si:dkeyp-75h12.5 | -0.100 |
| ezra | 0.174 | onecut1 | -0.100 |
| wnt10a | 0.173 | mllt11 | -0.098 |
| si:dkey-102m7.3 | 0.173 | ywhah | -0.098 |
| crabp2a | 0.172 | atp6v0cb | -0.097 |
| tpbga | 0.170 | scrt2 | -0.096 |