| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| shhb | 0.499 | ptmab | -0.109 |
| shha | 0.487 | ptmaa | -0.099 |
| foxa2 | 0.476 | hoxb9a | -0.092 |
| spon1b | 0.475 | gas1b | -0.089 |
| slit1b | 0.460 | hnrnpaba | -0.088 |
| clu | 0.452 | hoxb3a | -0.087 |
| arxa | 0.438 | tubb2b | -0.083 |
| ntn1b | 0.415 | tmsb4x | -0.082 |
| vasna | 0.413 | pax3a | -0.081 |
| sparcl1 | 0.395 | elavl3 | -0.081 |
| foxa1 | 0.388 | hmgb1b | -0.079 |
| slit2 | 0.362 | hoxc3a | -0.078 |
| urp2 | 0.358 | hoxb8a | -0.077 |
| trabd2b | 0.357 | marcksb | -0.074 |
| foxa | 0.341 | sp8b | -0.072 |
| ptgs2a | 0.338 | cadm3 | -0.072 |
| tmem88b | 0.336 | tmeff1b | -0.072 |
| myl9a | 0.333 | khdrbs1a | -0.071 |
| hpgd | 0.332 | si:ch211-288g17.3 | -0.071 |
| npr3 | 0.328 | hsp90ab1 | -0.070 |
| ctgfa | 0.312 | cirbpa | -0.070 |
| lcn15 | 0.305 | hoxa9a | -0.069 |
| gpc5b | 0.299 | cirbpb | -0.069 |
| loxl5b | 0.297 | hnrnpa0b | -0.067 |
| lmx1bb | 0.292 | myt1b | -0.065 |
| scinlb | 0.288 | si:ch211-251b21.1 | -0.065 |
| zgc:162730 | 0.279 | fabp3 | -0.065 |
| sulf1 | 0.278 | hoxd3a | -0.065 |
| gucy1a1 | 0.265 | boc | -0.065 |
| cyr61l2 | 0.259 | stmn1b | -0.064 |
| col9a3 | 0.257 | ddx39ab | -0.064 |
| aplnr2 | 0.252 | pax6a | -0.064 |
| BX908782.3 | 0.244 | hmgn2 | -0.064 |
| scospondin | 0.244 | elavl4 | -0.063 |
| fxyd1 | 0.241 | calm2b | -0.063 |