| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| foxa2 | 0.388 | cyt1 | -0.207 |
| shhb | 0.339 | cyt1l | -0.182 |
| shha | 0.333 | si:dkey-16p21.8 | -0.147 |
| sox2 | 0.268 | krt5 | -0.145 |
| pitx1 | 0.258 | pfn1 | -0.145 |
| fxyd1 | 0.235 | col2a1b | -0.143 |
| foxa1 | 0.221 | krtt1c19e | -0.141 |
| fgfrl1b | 0.201 | col1a2 | -0.140 |
| fabp2 | 0.195 | zgc:175088 | -0.138 |
| ptch2 | 0.193 | spaca4l | -0.133 |
| wnt11r | 0.190 | rbp4 | -0.130 |
| sox19b | 0.183 | col11a1a | -0.129 |
| krt18a.1 | 0.177 | krt4 | -0.128 |
| icn | 0.177 | thy1 | -0.128 |
| foxa | 0.177 | lgals1l1 | -0.125 |
| si:busm1-71b9.3 | 0.173 | ecrg4b | -0.125 |
| ephb4a | 0.173 | col1a1a | -0.124 |
| barx1 | 0.168 | col1a1b | -0.123 |
| si:ch211-51i16.1 | 0.159 | tfap2a | -0.120 |
| sema3bl | 0.156 | aep1 | -0.116 |
| ociad2 | 0.154 | si:dkey-33c14.3 | -0.115 |
| foxe1 | 0.152 | zgc:136930 | -0.112 |
| dmrt2b | 0.149 | col5a1 | -0.111 |
| fzd8a | 0.146 | kera | -0.111 |
| anos1a | 0.146 | actb2 | -0.109 |
| zgc:163121 | 0.143 | actb1 | -0.108 |
| cxcl12b | 0.143 | ptgdsb.1 | -0.108 |
| inhbaa | 0.139 | wu:fa03e10 | -0.107 |
| rbp5 | 0.136 | cfl1l | -0.104 |
| pitx2 | 0.134 | col14a1b | -0.104 |
| nkx3.3 | 0.132 | si:dkey-183i3.5 | -0.103 |
| cldnb | 0.132 | si:ch211-166a6.5 | -0.102 |
| gstp1 | 0.129 | hdlbpa | -0.102 |
| sox4b | 0.127 | DSG2 | -0.102 |
| gstp2 | 0.125 | sparc | -0.101 |