| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| clybl | 0.267 | tuba1a | -0.048 |
| rspo1 | 0.258 | hoxb3a | -0.047 |
| zic6 | 0.211 | meis1b | -0.046 |
| cep112 | 0.186 | tuba1c | -0.043 |
| fabp11a | 0.182 | si:ch73-265d7.2 | -0.042 |
| BX005454.1 | 0.181 | tmeff1b | -0.042 |
| zic2a | 0.180 | hoxc3a | -0.040 |
| zic4 | 0.172 | hoxb8a | -0.040 |
| zic1 | 0.167 | elavl3 | -0.039 |
| zic5 | 0.155 | hoxb9a | -0.039 |
| BX469902.1 | 0.151 | calm2a | -0.038 |
| zic3 | 0.150 | hoxb1b | -0.038 |
| zgc:114181 | 0.143 | ptmaa | -0.038 |
| BX511142.1 | 0.135 | dpysl2b | -0.037 |
| zgc:158785 | 0.132 | hoxd3a | -0.037 |
| tenm3 | 0.123 | ntn1a | -0.036 |
| tnfrsf19 | 0.123 | myt1b | -0.035 |
| fabp7b | 0.117 | sp8b | -0.035 |
| otx1 | 0.114 | calm2b | -0.034 |
| rspo2 | 0.112 | jpt1b | -0.034 |
| otx2b | 0.108 | hoxb7a | -0.033 |
| CR936482.1 | 0.107 | marcksl1b | -0.033 |
| wnt8b | 0.099 | CABZ01075068.1 | -0.033 |
| fzd10 | 0.098 | hoxa3a | -0.033 |
| smtnl | 0.097 | nr2f6b | -0.032 |
| atoh1c | 0.093 | hoxc8a | -0.032 |
| hs3st1l2 | 0.093 | hapln1a | -0.032 |
| oatx | 0.090 | epha4b | -0.031 |
| wls | 0.089 | lin28a | -0.031 |
| rspo3 | 0.089 | stxbp1a | -0.031 |
| axin2 | 0.088 | aldocb | -0.031 |
| otx2a | 0.088 | nes | -0.030 |
| wnt3 | 0.088 | tubb5 | -0.030 |
| gdf10a | 0.084 | meis2b | -0.030 |
| mdka | 0.083 | zc4h2 | -0.030 |