| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| ntd5 | 0.395 | pitx2 | -0.206 |
| ptgdsb.2 | 0.371 | shisa2a | -0.185 |
| col15a1a | 0.364 | tbx16 | -0.175 |
| angptl6 | 0.360 | klf17 | -0.174 |
| hoxb7a | 0.347 | gsc | -0.172 |
| selenon | 0.342 | fscn1a | -0.171 |
| fkbp14 | 0.332 | stm | -0.165 |
| hoxc3a | 0.332 | otx2a | -0.165 |
| hoxd9a | 0.325 | frzb | -0.163 |
| p3h1 | 0.323 | zgc:174153 | -0.162 |
| fibinb | 0.319 | ctslb | -0.161 |
| kdelr2b | 0.316 | si:ch73-160h15.3 | -0.161 |
| lhfpl6 | 0.316 | f11r.1 | -0.160 |
| hjv | 0.310 | fzd8b | -0.156 |
| fn1a | 0.308 | chrd | -0.155 |
| hoxc8a | 0.308 | si:dkey-269i1.4 | -0.155 |
| alpi.1 | 0.308 | epcam | -0.154 |
| fkbp7 | 0.307 | si:dkey-239j18.2 | -0.151 |
| rcn3 | 0.305 | fzd8a | -0.150 |
| emilin3a | 0.305 | si:ch211-173m16.2 | -0.150 |
| calua | 0.304 | otx1 | -0.150 |
| zgc:113691 | 0.304 | spint2 | -0.148 |
| b3gnt7l | 0.304 | bambia | -0.148 |
| loxl5b | 0.301 | si:dkey-239j18.3 | -0.146 |
| ppp1r14c | 0.297 | cst3 | -0.144 |
| ckap4 | 0.296 | ddx4 | -0.144 |
| gdf11 | 0.295 | nnr | -0.143 |
| bcam | 0.293 | he1.2 | -0.142 |
| si:ch211-129o18.4 | 0.293 | mctp2b | -0.142 |
| crtap | 0.292 | ap1s3b | -0.141 |
| parvb | 0.291 | h1m | -0.141 |
| XLOC-001964 | 0.290 | si:ch1073-190k2.1 | -0.140 |
| clu | 0.290 | stard10 | -0.139 |
| fkbp9 | 0.290 | elovl6 | -0.139 |
| aebp1 | 0.288 | wu:fb97g03 | -0.138 |