| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| shha | 0.117 | cdx4 | -0.094 |
| gpm6aa | 0.105 | apoeb | -0.072 |
| irx1a | 0.100 | apela | -0.070 |
| si:ch73-30b17.2 | 0.098 | msx1b | -0.069 |
| nova2 | 0.098 | nradd | -0.066 |
| nkx2.4a | 0.097 | zwi | -0.064 |
| marcksl1a | 0.095 | cldn19 | -0.062 |
| foxa2 | 0.092 | BX001014.2 | -0.062 |
| CR751602.2 | 0.089 | XLOC-001964 | -0.061 |
| spon1b | 0.088 | hspb1 | -0.061 |
| CU634008.1 | 0.087 | BX005254.3 | -0.059 |
| nkx2.4b | 0.086 | XLOC-042222 | -0.058 |
| pitx2 | 0.084 | zgc:112994 | -0.056 |
| otx2a | 0.083 | nrgna | -0.055 |
| hmgb3a | 0.081 | cldnk | -0.055 |
| zfhx3 | 0.080 | znfl2a | -0.055 |
| si:dkey-208c12.2 | 0.079 | mbpa | -0.055 |
| fgfr3 | 0.077 | cdh6 | -0.055 |
| zfhx4 | 0.076 | selenoh | -0.055 |
| ptprn2 | 0.076 | asb11 | -0.055 |
| ntn1b | 0.075 | ppp1r14aa | -0.054 |
| foxa1 | 0.075 | mllt3 | -0.054 |
| marcksl1b | 0.075 | si:ch211-156j16.1 | -0.054 |
| si:ch73-386h18.1 | 0.075 | si:dkey-164f24.2 | -0.054 |
| nova1 | 0.075 | col5a2a | -0.054 |
| tox | 0.074 | gdf6b | -0.053 |
| sulf2b | 0.073 | cdhr5a | -0.053 |
| mbd3b | 0.073 | cd59 | -0.053 |
| pou3f3b | 0.071 | si:dkeyp-110a12.4 | -0.052 |
| foxa | 0.070 | prickle1a | -0.052 |
| lrrn1 | 0.070 | mbpb | -0.052 |
| wu:fb55g09 | 0.069 | depdc7a | -0.051 |
| myt1b | 0.069 | timd4 | -0.051 |
| shhb | 0.069 | zic2b | -0.051 |
| irx2a | 0.068 | hoxc3a | -0.050 |