| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lmx1bb | 0.458 | ptmaa | -0.066 |
| pitx3 | 0.394 | cadm3 | -0.065 |
| shha | 0.324 | gas1b | -0.062 |
| vasna | 0.320 | si:ch211-251b21.1 | -0.061 |
| arxa | 0.288 | sp8b | -0.060 |
| pitx2 | 0.267 | gapdhs | -0.058 |
| tmem88b | 0.261 | ckbb | -0.058 |
| dmrta2 | 0.236 | gpm6ab | -0.054 |
| foxa1 | 0.229 | slc1a2b | -0.054 |
| foxa2 | 0.220 | pax6a | -0.053 |
| spon1b | 0.216 | pax6b | -0.052 |
| ntn1b | 0.206 | gng3 | -0.052 |
| clu | 0.201 | atp5mc1 | -0.051 |
| si:dkey-208c12.2 | 0.195 | fabp7a | -0.051 |
| slit1b | 0.194 | snap25a | -0.050 |
| shhb | 0.194 | elavl4 | -0.050 |
| slit2 | 0.178 | hoxd3a | -0.049 |
| loxl5b | 0.176 | atp1b4 | -0.049 |
| prdx1 | 0.173 | cplx2 | -0.049 |
| cxcl12b | 0.168 | stmn1b | -0.048 |
| foxa | 0.166 | calm2b | -0.048 |
| epha7 | 0.162 | mt-atp6 | -0.048 |
| trabd2b | 0.160 | atp1a1b | -0.048 |
| rspo2 | 0.156 | irx3b | -0.048 |
| barhl1a | 0.154 | sncb | -0.046 |
| npr3 | 0.153 | pax3a | -0.045 |
| wls | 0.151 | rbfox1 | -0.045 |
| sema3bl | 0.150 | atp5if1b | -0.045 |
| scospondin | 0.150 | stx1b | -0.045 |
| barhl1b | 0.144 | sp8a | -0.045 |
| fgfr3 | 0.143 | hoxb9a | -0.044 |
| myl9a | 0.138 | ldhba | -0.043 |
| bmp1a | 0.135 | mdkb | -0.043 |
| ctgfa | 0.133 | cplx2l | -0.043 |
| col9a3 | 0.128 | sox19b | -0.043 |