| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx4 | 0.244 | id1 | -0.049 |
| vsx2 | 0.237 | sox3 | -0.041 |
| shox2 | 0.171 | sox19a | -0.040 |
| vsx1 | 0.141 | npm1a | -0.038 |
| shox | 0.109 | snu13b | -0.038 |
| meis3 | 0.099 | ccnd1 | -0.038 |
| meis2b | 0.089 | pcna | -0.037 |
| nkx6.1 | 0.082 | XLOC-003690 | -0.037 |
| nell2b | 0.079 | nop58 | -0.037 |
| foxn4 | 0.079 | dkc1 | -0.036 |
| golga7ba | 0.074 | cdca7a | -0.036 |
| bhlhe22 | 0.069 | mdka | -0.036 |
| hes2.2 | 0.069 | mcm6 | -0.036 |
| hes2.1 | 0.068 | nop56 | -0.035 |
| mab21l2 | 0.066 | fbl | -0.034 |
| si:ch211-237l4.6 | 0.066 | her2 | -0.034 |
| elavl4 | 0.064 | nutf2l | -0.034 |
| nsg2 | 0.064 | cldn5a | -0.034 |
| pik3r3b | 0.063 | mcm3 | -0.033 |
| hoxb3a | 0.062 | aldob | -0.033 |
| nkx6.3 | 0.060 | rsl1d1 | -0.033 |
| ckbb | 0.060 | paics | -0.033 |
| hoxd3a | 0.060 | sdc4 | -0.033 |
| ndrg1b | 0.060 | akap12b | -0.032 |
| calb2b | 0.059 | anp32b | -0.032 |
| hoxc4a | 0.059 | mcm5 | -0.032 |
| sox14 | 0.059 | ctnnb1 | -0.032 |
| crabp1b | 0.059 | nhp2 | -0.032 |
| crx | 0.059 | fosab | -0.032 |
| chgb | 0.058 | ranbp1 | -0.032 |
| sulf2b | 0.058 | XLOC-003689 | -0.032 |
| ntng1a | 0.058 | gas1b | -0.032 |
| meis1b | 0.057 | lig1 | -0.031 |
| tshz2 | 0.056 | bzw1b | -0.031 |
| hoxc9a | 0.056 | hspb1 | -0.031 |