| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc13a | 0.719 | NC-002333.4 | -0.122 |
| hoxa13a | 0.584 | hspb1 | -0.114 |
| hoxb13a | 0.518 | hnrnpa1a | -0.110 |
| hoxd12a | 0.452 | stm | -0.109 |
| hoxd13a | 0.444 | bms1 | -0.103 |
| si:dkeyp-71f10.5 | 0.442 | akap12b | -0.101 |
| hoxa13b | 0.425 | hnrnpm | -0.101 |
| hoxa11a | 0.329 | ncl | -0.101 |
| col21a1 | 0.322 | anp32e | -0.100 |
| hoxc12b | 0.320 | s100a1 | -0.099 |
| hoxa10b | 0.314 | fbl | -0.099 |
| hoxb10a | 0.303 | insb | -0.097 |
| si:dkeyp-110a12.4 | 0.282 | rbm4.3 | -0.095 |
| alpi.1 | 0.276 | npm1a | -0.094 |
| lrrc17 | 0.264 | si:ch211-152c2.3 | -0.094 |
| hoxc11b | 0.262 | gar1 | -0.093 |
| gdf11 | 0.261 | aldob | -0.093 |
| hoxd10a | 0.254 | zgc:110216 | -0.093 |
| rarga | 0.253 | hnrnpub | -0.093 |
| hoxa11b | 0.250 | srsf1a | -0.092 |
| zmp:0000000846 | 0.242 | cd2bp2 | -0.091 |
| zgc:162939 | 0.241 | hdgfl2 | -0.090 |
| hoxc11a | 0.236 | tbx16 | -0.090 |
| hoxc10a | 0.232 | hnrnpa1b | -0.090 |
| pcp4a | 0.229 | si:dkey-66i24.9 | -0.089 |
| cpamd8 | 0.224 | fscn1a | -0.089 |
| her12 | 0.214 | safb | -0.089 |
| dapp1 | 0.211 | si:dkey-92i17.2 | -0.087 |
| hoxc12a | 0.209 | ddx18 | -0.087 |
| clu | 0.208 | ing5b | -0.086 |
| LOC110439428 | 0.207 | tardbp | -0.086 |
| hoxd11a | 0.206 | snrnp70 | -0.086 |
| bmp2a | 0.205 | fth1a | -0.086 |
| crabp1b | 0.205 | acin1b | -0.085 |
| her15.1 | 0.205 | dkc1 | -0.085 |