| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc13b | 0.307 | rcor2 | -0.015 |
| hoxb13a | 0.303 | foxg1b | -0.013 |
| hoxa13b | 0.260 | alyref | -0.013 |
| hoxc12b | 0.232 | XLOC-042899 | -0.013 |
| hoxd12a | 0.183 | ahcy | -0.013 |
| LOC100535130 | 0.162 | tmpob | -0.012 |
| hoxc12a | 0.157 | CABZ01005379.1 | -0.012 |
| eve1 | 0.155 | dek | -0.012 |
| vimr1 | 0.151 | vsx1 | -0.012 |
| hoxd13a | 0.145 | rrm1 | -0.012 |
| AL831726.1 | 0.145 | si:ch211-156b7.4 | -0.012 |
| LOC101885945 | 0.136 | mcm7 | -0.011 |
| hoxa13a | 0.135 | otx2b | -0.011 |
| c1qtnf5 | 0.134 | rad21a | -0.011 |
| LOC100538221 | 0.125 | ptges3b | -0.011 |
| CABZ01074130.1 | 0.104 | si:ch211-114n24.6 | -0.011 |
| hoxa9a | 0.102 | hnrnpa1a | -0.011 |
| hoxa11a | 0.100 | foxn4 | -0.011 |
| tradv26.0 | 0.096 | taf15 | -0.011 |
| hoxb10a | 0.096 | pax6a | -0.011 |
| hoxd11a | 0.095 | usp1 | -0.010 |
| si:dkey-78l4.13 | 0.095 | seta | -0.010 |
| hoxa10b | 0.092 | ncapd2 | -0.010 |
| dcn | 0.090 | nuf2 | -0.010 |
| im:7150988 | 0.089 | thap12a | -0.010 |
| acy3.1 | 0.087 | api5 | -0.010 |
| hoxb9a | 0.086 | zgc:110216 | -0.010 |
| fam149a | 0.084 | snrpc | -0.010 |
| mnx2b | 0.084 | smc2 | -0.010 |
| CU633999.1 | 0.084 | si:dkey-185e18.7 | -0.010 |
| mxra5b | 0.083 | smarcc1a | -0.010 |
| col1a1a | 0.083 | cdca5 | -0.010 |
| hoxa9b | 0.080 | nup160 | -0.010 |
| hoxd10a | 0.079 | si:dkey-25o16.4 | -0.010 |
| prrx1a | 0.079 | exosc2 | -0.010 |