| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc13b | 0.719 | stm | -0.082 |
| hoxa13a | 0.699 | si:ch211-152c2.3 | -0.077 |
| hoxb13a | 0.654 | s100a1 | -0.077 |
| hoxa13b | 0.529 | hspb1 | -0.076 |
| hoxd13a | 0.500 | insb | -0.076 |
| hoxd12a | 0.491 | hnrnpa1a | -0.075 |
| hoxc12b | 0.401 | NC-002333.4 | -0.075 |
| si:dkeyp-71f10.5 | 0.370 | aldob | -0.073 |
| si:dkeyp-110a12.4 | 0.347 | bms1 | -0.073 |
| hoxc12a | 0.339 | ing5b | -0.073 |
| hoxa10b | 0.327 | ncl | -0.072 |
| gdf11 | 0.320 | gar1 | -0.071 |
| col21a1 | 0.306 | FQ323156.1 | -0.069 |
| hoxb10a | 0.306 | anp32e | -0.069 |
| lrrc17 | 0.304 | ube2na | -0.068 |
| hoxa11a | 0.298 | si:dkey-66i24.9 | -0.068 |
| pcp4a | 0.292 | akap12b | -0.067 |
| hoxd10a | 0.279 | hnrnpm | -0.066 |
| hoxc11b | 0.275 | zgc:110216 | -0.066 |
| zgc:162939 | 0.271 | si:dkey-92i17.2 | -0.065 |
| alpi.1 | 0.270 | tbx16 | -0.065 |
| LOC101887111 | 0.264 | nr6a1a | -0.065 |
| her15.1 | 0.262 | fbl | -0.065 |
| hoxc11a | 0.260 | lig1 | -0.064 |
| her12 | 0.259 | acin1b | -0.063 |
| crabp1b | 0.257 | si:dkey-31g6.6 | -0.063 |
| fgf3 | 0.250 | hdgfl2 | -0.063 |
| zmp:0000000846 | 0.249 | smc4 | -0.063 |
| XLOC-032110 | 0.245 | tent5ba | -0.063 |
| hoxc10a | 0.245 | fscn1a | -0.062 |
| rarga | 0.244 | ddx18 | -0.062 |
| eve1 | 0.239 | cd2bp2 | -0.062 |
| fgf10a | 0.238 | pum3 | -0.062 |
| fgf4 | 0.234 | rrs1 | -0.062 |
| esrrga | 0.229 | chrd | -0.062 |