| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd12a | 0.438 | fabp7a | -0.121 |
| hoxc13a | 0.408 | actb2 | -0.100 |
| hoxc11b | 0.391 | gpm6bb | -0.095 |
| hoxc12a | 0.389 | zgc:165461 | -0.092 |
| hoxc11a | 0.321 | atp1a1b | -0.092 |
| hoxc13b | 0.291 | id1 | -0.087 |
| hoxa11a | 0.260 | btg2 | -0.083 |
| hoxa13b | 0.234 | XLOC-003690 | -0.083 |
| hoxd13a | 0.233 | notch3 | -0.082 |
| hoxd11a | 0.233 | her15.1 | -0.081 |
| hoxa11b | 0.233 | fosab | -0.080 |
| hoxc10a | 0.219 | mdka | -0.079 |
| hoxd10a | 0.216 | msi1 | -0.077 |
| hoxa10b | 0.186 | cd82a | -0.077 |
| hoxd3a | 0.164 | CR848047.1 | -0.076 |
| hoxa9b | 0.152 | her4.2 | -0.075 |
| hoxa13a | 0.147 | junba | -0.075 |
| hoxa9a | 0.137 | sox3 | -0.074 |
| snap25a | 0.136 | ppap2d | -0.074 |
| olfm1b | 0.136 | cd63 | -0.074 |
| hoxb10a | 0.133 | itm2ba | -0.073 |
| hoxd9a | 0.132 | efhd1 | -0.071 |
| elavl4 | 0.131 | atp1b4 | -0.071 |
| cplx2 | 0.126 | fgfr3 | -0.071 |
| sncb | 0.124 | CU467822.1 | -0.071 |
| calm2a | 0.121 | hoxc1a | -0.070 |
| sncgb | 0.120 | XLOC-003689 | -0.069 |
| myt1b | 0.119 | si:ch73-21g5.7 | -0.068 |
| gng3 | 0.118 | glula | -0.067 |
| stx1b | 0.118 | fgfr2 | -0.067 |
| pik3r3b | 0.118 | her4.1 | -0.067 |
| ptmaa | 0.117 | nfia | -0.067 |
| apoc1 | 0.115 | klf6a | -0.066 |
| rbfox3a | 0.115 | id3 | -0.066 |
| nrn1a | 0.114 | her6 | -0.066 |