| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb5a | 0.353 | col2a1b | -0.093 |
| hoxb6a | 0.297 | fibina | -0.083 |
| hoxb6b | 0.271 | col9a1a | -0.082 |
| hoxc1a | 0.247 | col2a1a | -0.080 |
| hoxb1b | 0.227 | col9a2 | -0.078 |
| hoxc4a | 0.212 | col11a1a | -0.077 |
| hoxb8a | 0.193 | krt8 | -0.076 |
| meis3 | 0.191 | cnmd | -0.074 |
| hoxb3a | 0.184 | col9a3 | -0.069 |
| meis2b | 0.173 | fgfbp2b | -0.067 |
| hoxc3a | 0.160 | bhmt | -0.066 |
| dhrs3b | 0.150 | cthrc1a | -0.064 |
| hoxa5a | 0.139 | matn4 | -0.061 |
| hoxc5a | 0.136 | VIT | -0.061 |
| rdh10a | 0.135 | col11a1b | -0.060 |
| cyp26a1 | 0.134 | col11a2 | -0.060 |
| hoxa3a | 0.132 | sparc | -0.058 |
| meis1b | 0.122 | dcn | -0.057 |
| aldh1a2 | 0.121 | CU929237.1 | -0.057 |
| hoxc6a | 0.117 | thbs1b | -0.057 |
| BX936342.2 | 0.111 | sox9a | -0.054 |
| pbx1b | 0.105 | col5a1 | -0.054 |
| tmem88b | 0.099 | eef1da | -0.054 |
| shisa2a | 0.098 | postnb | -0.053 |
| hoxb2a | 0.096 | krt18a.1 | -0.052 |
| meis1a | 0.096 | lum | -0.051 |
| zgc:56699 | 0.095 | foxc1b | -0.051 |
| rbp5 | 0.093 | ecrg4a | -0.050 |
| pbx1a | 0.092 | pdgfrl | -0.050 |
| wu:fb97g03 | 0.092 | fmoda | -0.050 |
| cyp27c1 | 0.090 | ucmab | -0.049 |
| hoxb8b | 0.088 | otos | -0.049 |
| prdm1a | 0.087 | si:dkey-16p21.8 | -0.048 |
| foxf1 | 0.086 | fbp1a | -0.048 |
| tmem108 | 0.084 | rarga | -0.048 |