| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| otx2b | 0.203 | hoxb3a | -0.073 |
| zgc:101100 | 0.167 | hoxc3a | -0.068 |
| helt | 0.163 | hoxb9a | -0.065 |
| otx2a | 0.121 | meis1b | -0.062 |
| hs3st1l2 | 0.121 | hoxb8a | -0.059 |
| rbp5 | 0.109 | hoxb1b | -0.057 |
| si:ch211-69b22.5 | 0.107 | si:ch73-265d7.2 | -0.056 |
| LOC103909284 | 0.101 | vim | -0.054 |
| si:ch73-343g19.4 | 0.098 | hoxc9a | -0.054 |
| fabp7a | 0.094 | hoxb7a | -0.051 |
| zgc:165461 | 0.094 | hoxd3a | -0.051 |
| otx1 | 0.090 | hoxc8a | -0.051 |
| CR751602.2 | 0.089 | hoxa3a | -0.049 |
| pcp4l1 | 0.086 | hoxa9a | -0.048 |
| podxl | 0.086 | slc1a3a | -0.045 |
| tcf7l2 | 0.085 | ube2e3 | -0.045 |
| slc1a2b | 0.083 | hoxd9a | -0.044 |
| crabp1a | 0.081 | nr2f6b | -0.044 |
| FP245456.1 | 0.079 | hoxb10a | -0.044 |
| irx1a | 0.078 | hoxc1a | -0.044 |
| nr2e1 | 0.077 | elavl3 | -0.043 |
| LOC110438288 | 0.077 | meis1a | -0.043 |
| barhl1a | 0.075 | hoxa9b | -0.042 |
| irx2a | 0.074 | robo3 | -0.042 |
| nfia | 0.074 | hoxc6b | -0.042 |
| CU695117.1 | 0.073 | si:ch73-386h18.1 | -0.041 |
| ptn | 0.073 | serinc5 | -0.040 |
| CR848047.1 | 0.071 | col28a2a | -0.040 |
| ppap2d | 0.069 | nr2f5 | -0.039 |
| mir181b-3 | 0.069 | tmeff1b | -0.039 |
| LOC110439858 | 0.069 | gfap | -0.037 |
| stra6 | 0.068 | si:ch211-57n23.4 | -0.037 |
| her6 | 0.068 | fstl1a | -0.037 |
| marcksl1a | 0.068 | col18a1a | -0.037 |
| cdo1 | 0.068 | col4a5 | -0.037 |