| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zic1 | 0.381 | elavl3 | -0.116 |
| zic2a | 0.354 | ntn1a | -0.114 |
| zic5 | 0.334 | myt1b | -0.109 |
| gdf10a | 0.300 | gng3 | -0.105 |
| zic4 | 0.298 | gng2 | -0.103 |
| fzd10 | 0.276 | sp8b | -0.100 |
| zic2b | 0.265 | stxbp1a | -0.099 |
| zic6 | 0.259 | nkx6.1 | -0.097 |
| msx1b | 0.253 | elavl4 | -0.097 |
| gas1a | 0.247 | stx1b | -0.097 |
| mdkb | 0.224 | syt2a | -0.095 |
| prss35 | 0.224 | sncb | -0.094 |
| boc | 0.222 | snap25a | -0.093 |
| mdka | 0.219 | ptmaa | -0.092 |
| msx3 | 0.219 | calm1a | -0.091 |
| pax3a | 0.212 | sulf2b | -0.091 |
| BX469902.1 | 0.197 | tubb5 | -0.091 |
| pdgfaa | 0.185 | onecut1 | -0.091 |
| wls | 0.177 | jagn1a | -0.090 |
| axin2 | 0.171 | vamp2 | -0.090 |
| clybl | 0.169 | rtn1b | -0.090 |
| olig3 | 0.169 | cplx2 | -0.090 |
| gsx2 | 0.163 | zc4h2 | -0.088 |
| cdon | 0.151 | hapln1a | -0.088 |
| id1 | 0.150 | gap43 | -0.086 |
| si:ch211-69b22.5 | 0.150 | rtn1a | -0.085 |
| tnfrsf19 | 0.145 | cplx2l | -0.084 |
| draxin | 0.144 | calm2a | -0.083 |
| wnt10b | 0.144 | atp6v0cb | -0.083 |
| sema3gb | 0.142 | tmem59l | -0.083 |
| gas1b | 0.136 | sulf2a | -0.082 |
| tpbga | 0.136 | stmn2a | -0.082 |
| neo1a | 0.134 | tmeff1b | -0.081 |
| sox2 | 0.134 | ywhag2 | -0.081 |
| zfp36l1a | 0.128 | ntn1b | -0.080 |