| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zic5 | 0.537 | elavl3 | -0.181 |
| zic1 | 0.448 | rtn1a | -0.152 |
| msx1b | 0.395 | myt1b | -0.152 |
| zic4 | 0.369 | gng2 | -0.136 |
| zic3 | 0.354 | ntn1a | -0.136 |
| BX469902.1 | 0.344 | gpm6aa | -0.131 |
| gdf10a | 0.344 | hapln1a | -0.130 |
| fzd10 | 0.314 | gng3 | -0.129 |
| zic2b | 0.313 | stx1b | -0.126 |
| clybl | 0.289 | nova2 | -0.125 |
| msx3 | 0.281 | tmeff1b | -0.125 |
| gas1a | 0.274 | tuba1c | -0.125 |
| zic6 | 0.273 | stxbp1a | -0.124 |
| pax3a | 0.248 | myt1a | -0.123 |
| wls | 0.242 | elavl4 | -0.121 |
| wnt10b | 0.237 | calm1a | -0.121 |
| boc | 0.234 | tubb5 | -0.119 |
| cdh6 | 0.224 | syt2a | -0.118 |
| cdon | 0.222 | tmsb4x | -0.117 |
| msx2b | 0.213 | sncb | -0.116 |
| si:dkey-183j2.10 | 0.207 | snap25a | -0.116 |
| si:dkey-102m7.3 | 0.206 | si:dkeyp-75h12.5 | -0.115 |
| mdka | 0.205 | onecut1 | -0.115 |
| her9 | 0.199 | jagn1a | -0.115 |
| nog1 | 0.198 | vamp2 | -0.114 |
| prss35 | 0.198 | cplx2 | -0.114 |
| notum1a | 0.195 | si:dkey-276j7.1 | -0.113 |
| pdgfaa | 0.189 | rtn1b | -0.112 |
| tpbga | 0.189 | sulf2b | -0.111 |
| atoh1c | 0.187 | dpysl3 | -0.111 |
| sp5l | 0.187 | si:ch73-386h18.1 | -0.110 |
| mdkb | 0.186 | ube2d4 | -0.109 |
| axin2 | 0.185 | nova1 | -0.109 |
| atoh8 | 0.183 | csdc2a | -0.109 |
| adamtsl5 | 0.182 | rnasekb | -0.108 |