| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| ntn1a | 0.317 | pax3a | -0.192 |
| nkx2.2b | 0.307 | mdka | -0.184 |
| ntn1b | 0.295 | gas1a | -0.138 |
| nkx2.2a | 0.264 | msx1b | -0.130 |
| nkx2.9 | 0.238 | boc | -0.123 |
| wnt7aa | 0.218 | prss35 | -0.121 |
| ptch2 | 0.213 | irx3b | -0.120 |
| spon1b | 0.212 | cdx4 | -0.114 |
| rgma | 0.208 | zic2a | -0.111 |
| CU861477.1 | 0.203 | gas1b | -0.107 |
| fzd8a | 0.199 | stmn1a | -0.104 |
| gpm6aa | 0.198 | zic2b | -0.103 |
| metrnla | 0.196 | zic5 | -0.102 |
| lrp8 | 0.187 | fzd10 | -0.099 |
| heyl | 0.186 | slc1a3a | -0.097 |
| si:ch211-226m7.4 | 0.183 | rplp0 | -0.097 |
| CU467822.1 | 0.182 | pax7a | -0.097 |
| CU634008.1 | 0.181 | bcam | -0.096 |
| egf | 0.177 | npm1a | -0.092 |
| stox1 | 0.174 | zic3 | -0.091 |
| sulf2a | 0.174 | zic1 | -0.091 |
| si:ch73-265d7.2 | 0.173 | mcm7 | -0.091 |
| ptn | 0.172 | msx3 | -0.090 |
| tnc | 0.167 | apela | -0.089 |
| fgfr2 | 0.166 | dut | -0.089 |
| sparcl1 | 0.162 | calm2b | -0.089 |
| zgc:165461 | 0.162 | fen1 | -0.088 |
| lix1 | 0.162 | si:dkey-102m7.3 | -0.087 |
| gpm6bb | 0.161 | scube2 | -0.087 |
| sfrp5 | 0.160 | nop10 | -0.087 |
| egfra | 0.159 | pcna | -0.086 |
| BX511161.1 | 0.158 | rplp1 | -0.085 |
| npas1 | 0.158 | XLOC-001964 | -0.084 |
| ptprfb | 0.157 | si:dkey-151g10.6 | -0.084 |
| si:ch1073-303k11.2 | 0.157 | snu13b | -0.083 |